Persistence images: a stable vector representation of persistent homology
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Abstract: Many datasets can be viewed as a noisy sampling of an underlying space, and tools from topological data analysis can characterize this structure for the purpose of knowledge discovery. One such tool is persistent homology, which provides a multiscale description of the homological features within a dataset. A useful representation of this homological information is a persistence diagram (PD). Efforts have been made to map PDs into spaces with additional structure valuable to machine learning tasks. We convert a PD to a finite-dimensional vector representation which we call a persistence image (PI), and prove the stability of this transformation with respect to small perturbations in the inputs. The discriminatory power of PIs is compared against existing methods, showing significant performance gains. We explore the use of PIs with vector-based machine learning tools, such as linear sparse support vector machines, which identify features containing discriminating topological information. Finally, high accuracy inference of parameter values from the dynamic output of a discrete dynamical system (the linked twist map) and a partial differential equation (the anisotropic Kuramoto-Sivashinsky equation) provide a novel application of the discriminatory power of PIs.
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(only showing first 100 items - show all)- PersistenceImages
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- Understanding the topology and the geometry of the space of persistence diagrams via optimal partial transport
- On the choice of weight functions for linear representations of persistence diagrams
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- Topological data analysis approaches to uncovering the timing of ring structure onset in filamentous networks
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- Stratifying the space of barcodes using Coxeter complexes
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- Vector summaries of persistence diagrams for permutation-based hypothesis testing
- A topological approach for capturing high-order interactions in graph data with applications to anomaly detection in time-varying cryptocurrency transaction graphs
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- Topological data analysis for unsupervised feature selection in large scale spatial omics data sets
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- A survey of topological data analysis based image segmentation
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- Stability and approximations for decorated Reeb spaces
- Impact of redshift space distortions on persistent homology of cosmic matter density field
- Coarse embeddability of Wasserstein space and the space of persistence diagrams
- Topological data analysis approach to time series and shape analysis of dynamical system
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