Geodesic-based distance reveals nonlinear topological features in neural activity from mouse visual cortex

DOI10.1101/2021.05.21.444993MaRDI QIDQ2145252zbMATH OpenOpenAlexFDO

Authors Kosio Beshkov, P. H. E. Tiesinga

Publication date 17 June 2022

Published in Biological Cybernetics (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/s00422-021-00906-5

zbMATH Keywords

persistent homologytopological data analysisgeodesicsneural codingvisual processingneural manifolds

Mathematics Subject Classification ID

Persistent homology and applications, topological data analysis (55N31) Neural networks for/in biological studies, artificial life and related topics (92B20)

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Cites work

• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• scientific article; zbMATH DE number 2103273 (Why is no real title available?)
• scientific article; zbMATH DE number 7306880 (Why is no real title available?)
• Barcodes: The persistent topology of data
• Clique topology reveals intrinsic geometric structure in neural correlations
• Computational topology. An introduction
• Persistence images: a stable vector representation of persistent homology
• Probabilistic Principal Component Analysis
• Robust kernel Isomap
• Topology and data
• What can topology tell us about the neural code?

Cited in

(3)

• Geometrical Computations Explain Projection Patterns of Long-Range Horizontal Connections in Visual Cortex
• Clique topology reveals intrinsic geometric structure in neural correlations
• Neural manifold analysis of brain circuit dynamics in health and disease

Describes a project that uses

Uses Software

• Statsmodels
• CliqueTop
• Ripser.py
• PersistenceImages

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