| Publication | Date of Publication | Type |
|---|
Perfect taxon sampling and fixing taxon traceability: Introducing a class of phylogenetically decisive taxon sets
(available as arXiv preprint) | N/A | Paper |
The weighted total cophenetic index: A novel balance index for phylogenetic networks
(available as arXiv preprint) | N/A | Paper |
On the uniqueness of the maximum parsimony tree for data with few substitutions within the NNI neighborhood
(available as arXiv preprint) | N/A | Paper |
| treebalance | 2026-10-01 | Software |
| poweRbal | 2026-09-30 | Software |
| treeDbalance | 2026-07-30 | Software |
A strengthened bound on the number of states required to characterize maximum parsimony distance
Theoretical Computer Science | 2026-06-12 | Paper |
A height-based metaconcept for rooted tree balance and its implications for the B₁ index
(available as arXiv preprint) | 2026-01-01 | Paper |
Assessing 3D tree model quality and species classification using imbalance indices
(available as arXiv preprint) | 2026-01-01 | Paper |
On Agreement Subtrees in Multiple Phylogenetic Trees
(available as arXiv preprint) | 2026-01-01 | Paper |
Enumerating monophyletic characters in mathematical phylogenetics
(available as arXiv preprint) | 2026-01-01 | Paper |
| RootscanR | 2025-10-30 | Software |
The GFB tree and tree imbalance indices
Bulletin of Mathematical Biology | 2025-10-13 | Paper |
Metaconcepts of rooted tree balance
Bulletin of Mathematical Biology | 2025-09-10 | Paper |
Perfect taxon sampling and fixing taxon traceability: introducing a class of phylogenetically decisive collections of taxon sets
Bulletin of Mathematical Biology | 2025-07-28 | Paper |
On the correctness of maximum parsimony for data with few substitutions in the NNI neighborhood of phylogenetic trees
Annals of Combinatorics | 2025-07-03 | Paper |
A survey of the monotonicity and non-contradiction of consensus methods and supertree methods
Discrete Applied Mathematics | 2025-04-17 | Paper |
Tree balance in phylogenetic models
Philosophical Transactions of the Royal Society B: Biological Sciences | 2025-02-13 | Paper |
A strengthened bound on the number of states required to characterize maximum parsimony distance
(available as arXiv preprint) | 2025-01-01 | Paper |
Revealing the building blocks of tree balance: fundamental units of the Sackin and Colless Indices
(available as arXiv preprint) | 2025-01-01 | Paper |
The weighted total cophenetic index: a novel balance index for phylogenetic networks
Discrete Applied Mathematics | 2024-11-06 | Paper |
Tree balance indices: a comprehensive survey
(available as arXiv preprint) | 2024-01-09 | Paper |
A complete characterization of pairs of binary phylogenetic trees with identical A_k-alignments
(available as arXiv preprint) | 2024-01-01 | Paper |
Defining binary phylogenetic trees using parsimony
Annals of Combinatorics | 2023-11-15 | Paper |
Defining binary phylogenetic trees using parsimony: new bounds
Discrete Applied Mathematics | 2023-11-13 | Paper |
Measuring 3D tree imbalance of plant models using graph-theoretical approaches
(available as arXiv preprint) | 2023-07-26 | Paper |
How far is my network from being edge-based? Proximity measures for edge-basedness of unrooted phylogenetic networks
Discrete Applied Mathematics | 2023-06-15 | Paper |
| Tree Balance Indices | 2023-01-01 | Paper |
Effects of discordance between species and gene trees on phylogenetic diversity conservation
Journal of Mathematical Biology | 2022-12-13 | Paper |
Non-binary universal tree-based networks
Journal of Graph Algorithms and Applications | 2022-06-28 | Paper |
Measuring tree balance using symmetry nodes -- a new balance index and its extremal properties
Mathematical Biosciences | 2022-01-14 | Paper |
Discrete coalescent trees
Journal of Mathematical Biology | 2021-11-12 | Paper |
Discrete coalescent trees
Journal of Mathematical Biology | 2021-11-01 | Paper |
Combinatorial perspectives on Dollo-\(k\) characters in phylogenetics
Advances in Applied Mathematics | 2021-09-29 | Paper |
Tree balance indices: a comprehensive survey
(available as arXiv preprint) | 2021-09-25 | Paper |
| Phylogenetic Diversity Rankings in the Face of Extinctions: the Robustness of the Fair Proportion Index | 2021-07-01 | Paper |
Extremal values of the Sackin tree balance index
Annals of Combinatorics | 2021-06-17 | Paper |
On the balance of unrooted trees
Journal of Graph Algorithms and Applications | 2021-03-29 | Paper |
Unrooted non-binary tree-based phylogenetic networks
Discrete Applied Mathematics | 2021-03-17 | Paper |
| Refinement-stable Consensus Methods | 2021-02-08 | Paper |
Phylogenetic Diversity Rankings in the Face of Extinctions: the Robustness of the Fair Proportion Index
(available as arXiv preprint) | 2021-01-01 | Paper |
How tree-based is my network? Proximity measures for unrooted phylogenetic networks
Discrete Applied Mathematics | 2020-06-29 | Paper |
The space of tree-based phylogenetic networks
Bulletin of Mathematical Biology | 2020-06-17 | Paper |
On the minimum value of the Colless index and the bifurcating trees that achieve it
Journal of Mathematical Biology | 2020-05-29 | Paper |
Combinatorial views on persistent characters in phylogenetics
Advances in Applied Mathematics | 2020-05-26 | Paper |
Statistical inconsistency of maximum parsimony for k-tuple-site data
Bulletin of Mathematical Biology | 2019-06-12 | Paper |
| Extremal properties of the Colless balance index for rooted binary trees | 2019-04-22 | Paper |
On the Shapley value of unrooted phylogenetic trees
Bulletin of Mathematical Biology | 2019-03-26 | Paper |
On the information content of discrete phylogenetic characters
Journal of Mathematical Biology | 2019-03-01 | Paper |
On the information content of discrete phylogenetic characters
Journal of Mathematical Biology | 2019-03-01 | Paper |
Extremal properties of the Colless balance index for rooted binary trees
(available as arXiv preprint) | 2019-01-01 | Paper |
Maximum parsimony on subsets of taxa
Journal of Theoretical Biology | 2018-11-26 | Paper |
Sequence length bounds for resolving a deep phylogenetic divergence
Journal of Theoretical Biology | 2018-10-23 | Paper |
| Classes of treebased networks | 2018-10-16 | Paper |
| On the uniqueness of the maximum parsimony tree for data with up to two substitutions: an extension of the classic Buneman theorem in phylogenetics | 2018-08-21 | Paper |
Phylogenetic diversity and biodiversity indices on phylogenetic networks
Mathematical Biosciences | 2018-06-15 | Paper |
On the accuracy of ancestral sequence reconstruction for ultrametric trees with parsimony
Bulletin of Mathematical Biology | 2018-06-04 | Paper |
Comparing the rankings obtained from two biodiversity indices: the fair proportion index and the Shapley value
Journal of Theoretical Biology | 2018-03-15 | Paper |
Ancestral sequence reconstruction with maximum parsimony
Bulletin of Mathematical Biology | 2018-02-14 | Paper |
On the uniqueness of the maximum parsimony tree for data with up to two substitutions: an extension of the classic Buneman theorem in phylogenetics
(available as arXiv preprint) | 2018-01-01 | Paper |
Classes of treebased networks
(available as arXiv preprint) | 2018-01-01 | Paper |
Combinatorial views on persistent characters in phylogenetics
(available as arXiv preprint) | 2018-01-01 | Paper |
On the complexity of computing MP distance between binary phylogenetic trees
Annals of Combinatorics | 2017-11-30 | Paper |
On the quirks of maximum parsimony and likelihood on phylogenetic networks
Journal of Theoretical Biology | 2017-08-24 | Paper |
| Some Distributions on Finite Rooted Binary Trees | 2017-08-21 | Paper |
Some Distributions on Finite Rooted Binary Trees
(available as arXiv preprint) | 2017-01-01 | Paper |
Reduction rules for the maximum parsimony distance on phylogenetic trees
Theoretical Computer Science | 2016-08-31 | Paper |
On the maximum parsimony distance between phylogenetic trees
Annals of Combinatorics | 2016-03-18 | Paper |
| Non-hereditary Minimum Deep Coalescence trees | 2015-07-26 | Paper |
On computing the maximum parsimony score of a phylogenetic network
SIAM Journal on Discrete Mathematics | 2015-05-20 | Paper |
Non-hereditary Minimum Deep Coalescence trees
(available as arXiv preprint) | 2015-01-01 | Paper |
Mathematical aspects of phylogenetic groves
Annals of Combinatorics | 2013-08-26 | Paper |
Non-hereditary maximum parsimony trees
Journal of Mathematical Biology | 2012-10-22 | Paper |
| On the group theoretical background of assigning stepwise mutations onto phylogenies | 2011-10-18 | Paper |
On the group theoretical background of assigning stepwise mutations onto phylogenies
(available as arXiv preprint) | 2011-01-01 | Paper |
Revisiting an equivalence between maximum parsimony and maximum likelihood methods in phylogenetics
Bulletin of Mathematical Biology | 2010-04-12 | Paper |
