| Publication | Date of Publication | Type |
|---|
Lattice structures that parameterize regulatory network dynamics
Mathematical Biosciences | 2024-08-28 | Paper |
Extremal event graphs: a (stable) tool for analyzing noisy time series data
Foundations of Data Science | 2024-02-14 | Paper |
Quantifying robustness of the gap gene network
Journal of Theoretical Biology | 2024-02-13 | Paper |
A nonlinear delay model for metabolic oscillations in yeast cells
Bulletin of Mathematical Biology | 2023-12-12 | Paper |
Ribosome abundance control in prokaryotes
Bulletin of Mathematical Biology | 2023-11-06 | Paper |
Oscillator death in coupled biochemical oscillators
MCSS. Mathematics of Control, Signals, and Systems | 2023-10-12 | Paper |
Extending combinatorial regulatory network modeling to include activity control and decay modulation
SIAM Journal on Applied Dynamical Systems | 2022-09-21 | Paper |
Modeling transport regulation in gene regulatory networks
Bulletin of Mathematical Biology | 2022-07-19 | Paper |
Joint realizability of monotone Boolean functions
Theoretical Computer Science | 2022-06-13 | Paper |
Genetic networks encode secrets of their past
Journal of Theoretical Biology | 2022-05-16 | Paper |
Operon dynamics with state dependent transcription and/or translation delays
Journal of Mathematical Biology | 2022-01-18 | Paper |
Equilibria and their stability in networks with steep sigmoidal nonlinearities
SIAM Journal on Applied Dynamical Systems | 2021-11-22 | Paper |
Approximation of the mean escape time for a tilted periodic potential
Communications in Computational Physics | 2021-10-29 | Paper |
Stability and bifurcations of equilibria in networks with piecewise linear interactions
International Journal of Bifurcation and Chaos in Applied Sciences and Engineering | 2021-09-14 | Paper |
Interaction between arthropod filiform hairs in a fluid environment
Journal of Theoretical Biology | 2021-01-21 | Paper |
Joint Realizability of Monotone Boolean functions
(available as arXiv preprint) | 2020-12-02 | Paper |
| Rational design of complex phenotype via network models | 2020-10-08 | Paper |
Analysis of Dynamics of a Biphasic Isothermal DNA Amplification Reaction
SIAM Journal on Applied Mathematics | 2020-09-29 | Paper |
Using extremal events to characterize noisy time series
Journal of Mathematical Biology | 2020-03-05 | Paper |
| A poset metric from the directed maximum common edge subgraph | 2019-10-31 | Paper |
Comparison of combinatorial signatures of global network dynamics generated by two classes of ODE models
SIAM Journal on Applied Dynamical Systems | 2019-06-14 | Paper |
Role of resource allocation and transport in emergence of cross-feeding in microbial consortia
Journal of Theoretical Biology | 2019-03-11 | Paper |
The chemostat with lateral gene transfer
Journal of Biological Dynamics | 2018-12-05 | Paper |
The effects of interleukin-2 on immune response regulation
Mathematical Medicine and Biology: A Journal of the IMA | 2018-12-04 | Paper |
Model rejection and parameter reduction via time series
SIAM Journal on Applied Dynamical Systems | 2018-07-19 | Paper |
Global dynamics for switching systems and their extensions by linear differential equations
Physica D | 2018-02-22 | Paper |
Global dynamics for steep nonlinearities in two dimensions
Physica D | 2017-12-15 | Paper |
Symmetry Breaking in Soft Clustering Decoding of Neural Codes
IEEE Transactions on Information Theory | 2017-07-27 | Paper |
On the movement of vertex fixed points in the simple GA
Proceedings of the 11th workshop proceedings on Foundations of genetic algorithms | 2017-07-14 | Paper |
Combinatorial representation of parameter space for switching networks
SIAM Journal on Applied Dynamical Systems | 2016-12-16 | Paper |
Convergence properties of posttranslationally modified protein-protein switching networks with fast decay rates
Bulletin of Mathematical Biology | 2016-09-16 | Paper |
Cyclic feedback systems with quorum sensing coupling
Bulletin of Mathematical Biology | 2016-09-16 | Paper |
Quantifying the effects of the division of labor in metabolic pathways
Journal of Theoretical Biology | 2016-08-19 | Paper |
ODE, RDE and SDE models of cell cycle dynamics and clustering in yeast
Journal of Biological Dynamics | 2016-08-09 | Paper |
ODE, RDE and SDE models of cell cycle dynamics and clustering in yeast
Journal of Biological Dynamics | 2016-08-09 | Paper |
Dynamics of simple food webs
Bulletin of Mathematical Biology | 2016-01-13 | Paper |
| Global Dynamics for Steep Sigmoidal Nonlinearities in Two Dimensions | 2015-08-10 | Paper |
Discontinuous Galerkin calculations for a nonlinear PDE model of DNA transcription with short, transient and frequent pausing
Journal of Computational Mathematics | 2015-06-29 | Paper |
On the efficacy of state space reconstruction methods in determining causality
SIAM Journal on Applied Dynamical Systems | 2015-05-15 | Paper |
Predicting high-codimension critical transitions in dynamical systems using active learning
Mathematical and Computer Modelling of Dynamical Systems | 2014-12-22 | Paper |
The mathematical structure of information bottleneck methods
Entropy | 2014-09-08 | Paper |
A traffic flow model for bio-polymerization processes
Journal of Mathematical Biology | 2014-03-25 | Paper |
| Graph-based topological approximation of saddle-node bifurcation in maps | 2012-12-08 | Paper |
Effect of model selection on prediction of periodic behavior in gene regulatory networks
Bulletin of Mathematical Biology | 2012-11-07 | Paper |
Using machine learning to predict catastrophes in dynamical systems
Journal of Computational and Applied Mathematics | 2012-03-19 | Paper |
Senescence and antibiotic resistance in an age-structured population model
Journal of Mathematical Biology | 2010-11-11 | Paper |
Hantavirus transmission in sylvan and peridomestic environments
Bulletin of Mathematical Biology | 2010-06-23 | Paper |
Hyperbolicity of the fixed point set for the simple genetic algorithm
Theoretical Computer Science | 2010-05-27 | Paper |
Oscillations in monotone systems with a negative feedback
SIAM Journal on Applied Dynamical Systems | 2010-01-20 | Paper |
When activators repress and repressors activate: a qualitative analysis of the Shea-Ackers model
Bulletin of Mathematical Biology | 2009-08-04 | Paper |
Multi-valued characteristics and Morse decompositions
Journal of Differential Equations | 2009-07-09 | Paper |
Convergence of Map Seeking Circuits
Journal of Mathematical Imaging and Vision | 2009-03-31 | Paper |
Dynamics of a simple regulatory switch
Journal of Mathematical Biology | 2008-08-18 | Paper |
Singular boundary value problems via the Conley index
Topological Methods in Nonlinear Analysis | 2008-01-02 | Paper |
Topological horseshoes of traveling waves for a fast-slow predator-prey system
Journal of Dynamics and Differential Equations | 2007-12-19 | Paper |
Annealing and the normalized \(N\)-cut
Pattern Recognition | 2007-11-07 | Paper |
Genericity of the Fixed Point Set for the Infinite Population Genetic Algorithm
Foundations of Genetic Algorithms | 2007-09-07 | Paper |
Oscillations in multi-stable monotone systems with slowly varying feedback
Journal of Differential Equations | 2007-08-23 | Paper |
Effects of stimulus transformations on estimates of sensory neuron selectivity
Journal of Computational Neuroscience | 2006-08-23 | Paper |
The conley index for fast-slow systems. II: multidimensional slow variable
Journal of Differential Equations | 2006-07-20 | Paper |
Bifurcation structure of a class of \(S_N\)-invariant constrained optimization problems
Journal of Dynamics and Differential Equations | 2005-03-15 | Paper |
Phase locking in integrate-and-fire models with refractory periods and modulation
Journal of Mathematical Biology | 2005-02-25 | Paper |
Attractors in continuous-time switching networks
Communications on Pure and Applied Analysis | 2004-03-08 | Paper |
| scientific article; zbMATH DE number 2013219 (Why is no real title available?) | 2003-12-04 | Paper |
Attractor reconstruction from interspike intervals is incomplete
Physica D | 2003-04-02 | Paper |
Cyclic feedback systems
Memoirs of the American Mathematical Society | 2002-08-20 | Paper |
Global dynamics of neural nets with infinite gain
Physica D | 2002-05-12 | Paper |
Chaotic solutions in slowly varying perturbations of Hamiltonian systems with applications to shallow water sloshing
Journal of Dynamics and Differential Equations | 2002-03-13 | Paper |
Upper semicontinuity of Morse sets of a discretization of a delay-differential equation: An improvement.
Journal of Differential Equations | 2002-01-01 | Paper |
The Conley index for fast-slow systems. I: One-dimensional slow variable
Journal of Dynamics and Differential Equations | 2000-09-19 | Paper |
| scientific article; zbMATH DE number 1241740 (Why is no real title available?) | 1999-12-02 | Paper |
Upper semicontinuity of Morse sets of a discretization of a delay-differential equation
Journal of Differential Equations | 1999-10-18 | Paper |
| scientific article; zbMATH DE number 1241741 (Why is no real title available?) | 1999-08-08 | Paper |
A Lyapunov Function for Tridiagonal Competitive-cooperative Systems
SIAM Journal on Mathematical Analysis | 1999-06-27 | Paper |
A class of convergent neural network dynamics
Physica D | 1997-12-17 | Paper |
| scientific article; zbMATH DE number 897999 (Why is no real title available?) | 1996-10-24 | Paper |
Structure of the global attractor of cyclic feedback systems
Journal of Dynamics and Differential Equations | 1995-04-04 | Paper |
| scientific article; zbMATH DE number 90594 (Why is no real title available?) | 1993-01-16 | Paper |
| Shadowing Property of Continuous Maps | 1992-09-27 | Paper |
| scientific article; zbMATH DE number 11138 (Why is no real title available?) | 1992-06-25 | Paper |
| scientific article; zbMATH DE number 11138 (Why is no real title available?) | 1992-06-25 | Paper |
| scientific article; zbMATH DE number 4196308 (Why is no real title available?) | 1988-01-01 | Paper |
There are no chaotic mappings with residual scrambled sets
Bulletin of the Australian Mathematical Society | 1987-01-01 | Paper |
