| Publication | Date of Publication | Type |
|---|
| Computing with chemical reaction networks: a tutorial | 2024-02-09 | Paper |
| Democratic, existential, and consensus-based output conventions in stable computation by chemical reaction networks | 2023-11-30 | Paper |
| DNAQL: a query language for DNA sticker complexes | 2023-09-08 | Paper |
| The interlace polynomial and the Tutte–Martin polynomial | 2023-04-28 | Paper |
| A characterization of circle graphs in terms of total unimodularity | 2022-04-07 | Paper |
| On matrices and \(K\)-relations | 2022-02-14 | Paper |
| On matrices and \(K\)-relations | 2020-10-26 | Paper |
| Counterexamples to a conjecture of Las Vergnas | 2020-09-15 | Paper |
| On the Expressive Power of Query Languages for Matrices | 2020-08-06 | Paper |
| A characterization of circle graphs in terms of multimatroid representations | 2020-01-27 | Paper |
| Minimal output unstable configurations in chemical reaction networks and deciders | 2019-07-10 | Paper |
| Dominance and deficiency for Petri nets and chemical reaction networks | 2019-07-10 | Paper |
| Graphs Associated With DNA Rearrangements and Their Polynomials | 2019-03-11 | Paper |
| Characterizing $(0,\pm 1)$-matrices with only even-rank principal submatrices in terms of skew-symmetry | 2018-11-12 | Paper |
| Conditions for extinction events in chemical reaction networks with discrete state spaces | 2018-04-11 | Paper |
| Orienting transversals and transition polynomials of multimatroids | 2018-01-11 | Paper |
| Sorting by reversals and the theory of 4-regular graphs | 2017-12-06 | Paper |
| Isotropic matroids. III: Connectivity | 2017-07-13 | Paper |
| Isotropic matroids. II: Circle graphs | 2016-12-06 | Paper |
| Isotropic matroids. I: Multimatroids and neighborhoods | 2016-12-06 | Paper |
| Robustness of Expressivity in Chemical Reaction Networks | 2016-11-30 | Paper |
| Graph-theoretic formalization of hybridization in DNA sticker complexes | 2016-03-10 | Paper |
| Recombination faults in gene assembly in ciliates modeled using multimatroids | 2015-12-10 | Paper |
| Dominance and T-Invariants for Petri Nets and Chemical Reaction Networks | 2015-09-30 | Paper |
| Graph Polynomials Motivated by Gene Rearrangements in Ciliates | 2015-02-25 | Paper |
| Output Stability and Semilinear Sets in Chemical Reaction Networks and Deciders | 2014-10-08 | Paper |
| Interlace polynomials for multimatroids and delta-matroids | 2014-08-28 | Paper |
| The adjacency matroid of a graph | 2014-08-14 | Paper |
| The Algebra of Gene Assembly in Ciliates | 2014-06-23 | Paper |
| The nullity theorem for principal pivot transform | 2014-02-19 | Paper |
| Membrane systems with marked membranes | 2013-12-06 | Paper |
| On the inference of non-confluent NLC graph grammars | 2013-08-27 | Paper |
| Nullity and loop complementation for delta-matroids | 2013-06-27 | Paper |
| Quaternary matroids are vf-safe | 2013-02-18 | Paper |
| A type system for DNAQL | 2012-11-06 | Paper |
| Quaternary Bicycle Matroids and the Penrose Polynomial for Delta-Matroids | 2012-10-29 | Paper |
| Pivots, determinants, and perfect matchings of graphs | 2012-10-11 | Paper |
| A tour of reaction systems | 2012-08-29 | Paper |
| Binary symmetric matrix inversion through local complementation | 2012-06-20 | Paper |
| Representing reaction systems by trees | 2012-06-15 | Paper |
| A comparison of graph-theoretic DNA hybridization models | 2012-05-30 | Paper |
| The group structure of pivot and loop complementation on graphs and set systems | 2011-11-29 | Paper |
| Graph-theoretic formalization of hybridization in DNA sticker complexes | 2011-09-16 | Paper |
| Reaction systems with duration | 2011-06-24 | Paper |
| Characterizing compressibility of disjoint subgraphs with NLC grammars | 2011-06-03 | Paper |
| On aggregation in multiset-based self-assembly of graphs | 2011-05-23 | Paper |
| Nullity invariance for pivot and the interlace polynomial | 2011-04-11 | Paper |
| Maximal pivots on graphs with an application to gene assembly | 2010-11-25 | Paper |
| Pivot and loop complementation on graphs and set systems | 2010-06-17 | Paper |
| Combining overlap and containment for gene assembly in ciliates | 2010-02-19 | Paper |
| Extended strings and graphs for simple gene assembly | 2010-02-09 | Paper |
| REDUCTION GRAPHS FROM OVERLAP GRAPHS FOR GENE ASSEMBLY IN CILIATES | 2009-06-23 | Paper |
| Perfectly quilted rectangular snake tilings | 2009-04-16 | Paper |
| Extending the Overlap Graph for Gene Assembly in Ciliates | 2008-11-20 | Paper |
| Membrane systems with proteins embedded in membranes | 2008-11-06 | Paper |
| Strategies of loop recombination in ciliates | 2008-09-10 | Paper |
| The fibers and range of reduction graphs in ciliates | 2008-08-19 | Paper |
| Communication membrane systems with active symports | 2008-06-18 | Paper |
| A String-Based Model for Simple Gene Assembly | 2008-02-26 | Paper |
| From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates | 2008-02-26 | Paper |
| Characterizing Reduction Graphs for Gene Assembly in Ciliates | 2007-11-28 | Paper |
| Membrane Systems with External Control | 2007-09-03 | Paper |
| Cycles and communicating classes in membrane systems and molecular dynamics | 2007-03-27 | Paper |
| Multiset-based self-assembly of graphs | 2007-02-26 | Paper |
| Reducibility of gene patterns in ciliates using the breakpoint graph. | 2006-05-18 | Paper |
| COMPLEXITY OF BIO-COMPUTATION: SYMBOLIC DYNAMICS IN MEMBRANE SYSTEMS | 2006-04-06 | Paper |
