Jonathan Rubin

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List of research outcomes

This list is not complete and representing at the moment only items from zbMATH Open and arXiv. We are working on additional sources - please check back here soon!

PublicationDate of PublicationType
Rhythm generation, robustness, and control in stick insect locomotion: modeling and analysis
Journal of Computational Neuroscience
2026-05-27Paper
Erratum to: ``Calculation of expected reward rate in a two-alternative decision process''
SIAM Journal on Applied Mathematics
2025-07-29Paper
A nonlinear map describing relaxation to cluster states in an adapting neuronal network
SIAM Journal on Applied Dynamical Systems
2025-06-23Paper
Calculation of expected reward rate in a two-alternative decision process
SIAM Journal on Applied Mathematics
2025-03-10Paper
A novel mechanism for ramping bursts based on slow negative feedback in model respiratory neurons
Chaos
2024-08-26Paper
Transmission of delta band (0.5--4 Hz) oscillations from the globus pallidus to the substantia nigra pars reticulata in dopamine depletion
Journal of Computational Neuroscience
2024-04-03Paper
Sensitivity to Control Signals in Triphasic Rhythmic Neural Systems: A Comparative Mechanistic Analysis via Infinitesimal Local Timing Response Curves
Neural Computation
2023-08-28Paper
Slow negative feedback enhances robustness of square-wave bursting
Journal of Computational Neuroscience
2023-07-19Paper
Rigorous mapping of data to qualitative properties of parameter values and dynamics: a case study on a two-variable Lotka-Volterra system
Bulletin of Mathematical Biology
2023-07-13Paper
Qualitative inverse problems: mapping data to the features of trajectories and parameter values of an ODE model
Inverse Problems
2023-06-01Paper
On the Nonexistence of Terrestrial Canards: Linking Canards and Rivers
SIAM Journal on Applied Dynamical Systems
2022-12-08Paper
Parameter identification from single trajectory data: from linear to nonlinear2022-09-28Paper
Dynamics of ramping bursts in a respiratory neuron model
Journal of Computational Neuroscience
2022-08-10Paper
Activity patterns of a two-timescale neuronal ring model with voltage-dependent, piecewise smooth inhibitory coupling
SIAM Journal on Applied Dynamical Systems
2022-08-10Paper
A data-driven model of the role of energy in sepsis
Journal of Theoretical Biology
2022-01-20Paper
Type III responses to transient inputs in hybrid nonlinear neuron models
SIAM Journal on Applied Dynamical Systems
2021-08-02Paper
The roles of ascending sensory signals and top-down central control in the entrainment of a locomotor CPG
Biological Cybernetics
2021-03-26Paper
Interactions of solitary pulses of \textit{E. coli} in a one-dimensional nutrient gradient
Physica D
2021-01-12Paper
Interactions of persistent sodium and calcium-activated nonspecific cationic currents yield dynamically distinct bursting regimes in a model of respiratory neurons2020-11-17Paper
Interacting oscillations in neural control of breathing: modeling and qualitative analysis2020-11-17Paper
A reduced mathematical model of the acute inflammatory response. I: Derivation of model and analysis of anti-inflammation
Journal of Theoretical Biology
2020-09-17Paper
A reduced mathematical model of the acute inflammatory response. II: Capturing scenarios of repeated endotoxin administration
Journal of Theoretical Biology
2020-09-17Paper
Neural activity during a simple reaching task in macaques is counter to gating and rebound in basal ganglia-thalamic communication2020-08-24Dataset
Mouse substantia nigra responses to optogenetic stimulation of projections from striatum and globus pallidus2020-08-15Dataset
Complex bursting dynamics in an embryonic respiratory neuron model
Chaos: An Interdisciplinary Journal of Nonlinear Science
2020-08-04Paper
Local orthogonal rectification: deriving natural coordinates to study flows relative to manifolds
Discrete and Continuous Dynamical Systems. Series B
2020-08-03Paper
LOR for Analysis of Periodic Dynamics: A One-Stop Shop Approach
SIAM Journal on Applied Dynamical Systems
2020-02-27Paper
On the importance of the Jacobian determinant in parameter inference for random parameter and random measurement error models
SIAM/ASA Journal on Uncertainty Quantification
2019-10-17Paper
Mathematical modeling of energy consumption in the acute inflammatory response
Journal of Theoretical Biology
2019-02-05Paper
A new frame for an old (phase) portrait: finding rivers and other flow features in the plane
SIAM Journal on Applied Dynamical Systems
2018-12-20Paper
OSCILLATORY BURSTING MECHNISMS IN RESPIRATORY PACEMAKER NEURONS AND NETWORKS
Bursting
2018-12-18Paper
Numerical optimization of coordinated reset stimulation for desynchronizing neuronal network dynamics
Journal of Computational Neuroscience
2018-12-04Paper
Timescales and mechanisms of sigh-like bursting and spiking in models of rhythmic respiratory neurons
The Journal of Mathematical Neuroscience
2018-07-24Paper
Multiple timescale mixed bursting dynamics in a respiratory neuron model
Journal of Computational Neuroscience
2018-03-14Paper
Wild oscillations in a nonlinear neuron model with resets. II: Mixed-mode oscillations
Discrete and Continuous Dynamical Systems. Series B
2017-09-26Paper
Wild oscillations in a nonlinear neuron model with resets. I: Bursting, spike-adding and chaos
Discrete and Continuous Dynamical Systems. Series B
2017-09-26Paper
Analysis of interacting local oscillation mechanisms in three-timescale systems
SIAM Journal on Applied Mathematics
2017-06-30Paper
Robustness of solutions of the inverse problem for linear dynamical systems with uncertain data
SIAM/ASA Journal on Uncertainty Quantification
2017-06-28Paper
Traveling wave solutions in a chain of periodically forced coupled nonlinear oscillators
Physica D
2017-06-14Paper
Quantitative modeling and analysis of bifurcation-induced bursting2017-01-19Paper
Modeling the interactions of bacteria and toll-like receptor-mediated inflammation in necrotizing enterocolitis
Journal of Theoretical Biology
2016-08-01Paper
Conditions for multi-functionality in a rhythm generating network inspired by turtle scratching
The Journal of Mathematical Neuroscience
2016-05-12Paper
Averaging, Folded Singularities, and Torus Canards: Explaining Transitions between Bursting and Spiking in a Coupled Neuron Model
SIAM Journal on Applied Dynamical Systems
2015-11-03Paper
A boundary value approach to optimization with an application to salmonella competition
Bulletin of Mathematical Biology
2015-10-28Paper
Understanding and distinguishing three-time-scale oscillations: case study in a coupled Morris-Lecar system
SIAM Journal on Applied Dynamical Systems
2015-10-13Paper
Strategies to maximize burst lengths in rhythmic anti-phase activity of networks with reciprocal inhibition
International Journal of Bifurcation and Chaos in Applied Sciences and Engineering
2015-09-02Paper
The selection of mixed-mode oscillations in a Hodgkin-Huxley model with multiple timescales
Chaos: An Interdisciplinary Journal of Nonlinear Science
2015-03-03Paper
Identifiability of linear and linear-in-parameters dynamical systems from a single trajectory
SIAM Journal on Applied Dynamical Systems
2015-01-20Paper
Explicit maps to predict activation order in multiphase rhythms of a coupled cell network
The Journal of Mathematical Neuroscience
2014-07-14Paper
Locally contractive dynamics in generalized integrate-and-fire neurons
SIAM Journal on Applied Dynamical Systems
2014-01-22Paper
Cooperation of intrinsic bursting and calcium oscillations underlying activity patterns of model pre-Bötzinger complex neurons
Journal of Computational Neuroscience
2013-12-02Paper
First return maps for the dynamics of synaptically coupled conditional bursters
Biological Cybernetics
2013-06-21Paper
Tailoring inputs to achieve maximal neuronal firing
The Journal of Mathematical Neuroscience
2013-03-22Paper
Using nonlinear model predictive control to find optimal therapeutic strategies to modulate inflammation
Mathematical Biosciences and Engineering
2013-03-19Paper
Interaction of canard and singular Hopf mechanisms in a neural model
SIAM Journal on Applied Dynamical Systems
2012-04-19Paper
A reliability study of square wave bursting \(\beta\)-cells with noise
Discrete and Continuous Dynamical Systems. Series B
2011-10-10Paper
Stimulus-Driven Traveling Solutions in Continuum Neuronal Models with a General Smooth Firing Rate Function
SIAM Journal on Applied Mathematics
2011-04-08Paper
The dynamics of a forced coupled network of active elements
Physica D
2011-03-29Paper
Optimal Intrinsic Dynamics for Bursting in a Three-Cell Network
SIAM Journal on Applied Dynamical Systems
2010-05-06Paper
Competition between transients in the rate of approach to a fixed point
SIAM Journal on Applied Dynamical Systems
2010-01-20Paper
Competition between transients in the rate of approach to a fixed point
SIAM Journal on Applied Dynamical Systems
2010-01-20Paper
Mechanistic simulations of inflammation: current state and future prospects
Mathematical Biosciences
2009-04-17Paper
Giant squid-hidden canard: the 3D geometry of the Hodgkin-Huxley model
Biological Cybernetics
2007-11-12Paper
The Firing of an Excitable Neuron in the Presence of Stochastic Trains of Strong Synaptic Inputs
Neural Computation
2007-07-24Paper
The geometry of neuronal recruitment
Physica D
2006-10-19Paper
The Dynamic Range of Bursting in a Model Respiratory Pacemaker Network
SIAM Journal on Applied Dynamical Systems
2006-06-01Paper
Deriving Information about Architecture from Activity Patterns in Coupled Cell Systems
SIAM Journal on Applied Dynamical Systems
2005-02-28Paper
Analysis of a Canard Mechanism by Which Excitatory Synaptic Coupling Can Synchronize Neurons at Low Firing Frequencies
SIAM Journal on Applied Mathematics
2004-12-13Paper
Sustained Spatial Patterns of Activity in Neuronal Populations without Recurrent Excitation
SIAM Journal on Applied Mathematics
2004-12-13Paper
Multiple-spike waves in a one-dimensional integrate-and-fire neural network
Journal of Mathematical Biology
2004-12-01Paper
A nonlocal eigenvalue problem for the stability of a traveling wave in a neuronal medium
Discrete and Continuous Dynamical Systems
2004-11-01Paper
Effects of noise on elliptic bursters
Nonlinearity
2004-03-29Paper
Existence and stability of standing hole solutions to complex Ginzburg-Landau equations
Nonlinearity
2003-06-16Paper
Analysis of clustered firing patterns in synaptically coupled networks of oscillators
Journal of Mathematical Biology
2003-01-14Paper
Synchronized Activity and Loss of Synchrony Among Heterogeneous Conditional Oscillators
SIAM Journal on Applied Dynamical Systems
2003-01-05Paper
scientific article; zbMATH DE number 1787314 (Why is no real title available?)2002-10-21Paper
Regular traveling waves in a one-dimensional network of Theta neurons
SIAM Journal on Applied Mathematics
2002-04-17Paper
Steady states in an iterative model for multiplicative spike-timing-dependent plasticity
Network: Computation in Neural Systems
2001-09-04Paper
Stability, bifurcations and edge oscillations in standing pulse solutions to an inhomogeneous reaction-diffusion system
Proceedings of the Royal Society of Edinburgh: Section A Mathematics
1999-01-01Paper
Existence of standing pulse solutions to an inhomogeneous reaction-diffusion system
Journal of Dynamics and Differential Equations
1998-10-06Paper
Settling and asymptotic motion of aerosol particles in a cellular flow field
Journal of Nonlinear Science
1995-09-20Paper
Direct complements of invariant Lagrangian subspaces and minimal factorizations of skew-symmetric rational matrix functions
Linear Algebra and its Applications
1994-01-30Paper


Research outcomes over time


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