Integration of topological measures for eliminating non-specific interactions in protein interaction networks

DOI10.1016/J.DAM.2008.06.034MaRDI QIDQ1026211zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Murat Ali Bayir, Tacettin Dogacan Guney, Tolga Can

Publication date 24 June 2009

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2008.06.034

zbMATH Keywords

betweenness centralityclustering coefficientgraph clusteringline graph transformationprotein interaction networks

Mathematics Subject Classification ID

Applications of graph theory (05C90) Computational methods for problems pertaining to biology (92-08) Cell biology (92C37) Biochemistry, molecular biology (92C40)

Recommendations

• Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
• Towards Detecting Protein Complexes from Protein Interaction Data
• Research in Computational Molecular Biology
• Protein complex detection algorithm based on multiple topological characteristics in PPI networks
• Computational Science - ICCS 2004

Cites work

• BOULWARE STATE IN EXACTLY SOLVABLE MODELS OF 2D DILATON GRAVITY
• Centered graphs and the structure of ego networks
• Collective dynamics of `small-world' networks
• Graph Classes: A Survey
• Graph drawing software
• Research in Computational Molecular Biology

Cited in

(7)

• A survey of computational methods in protein-protein interaction networks
• Semantically assessing the reliability of protein interactions
• CABIN: Collective analysis of biological interaction networks
• Fast processing of graph queries on a large database of small and medium-sized data graphs
• Towards Detecting Protein Complexes from Protein Interaction Data
• Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
• scientific article; zbMATH DE number 2220311 (Why is no real title available?)

Describes a project that uses

Uses Software

• BioGRID
• MCODE

This page was built for publication: Integration of topological measures for eliminating non-specific interactions in protein interaction networks

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1026211)