Protein complex detection algorithm based on multiple topological characteristics in PPI networks

DOI10.1016/J.INS.2019.03.015MaRDI QIDQ2212571zbMATH OpenOpenAlexWikidataFDO

Authors Jie Wang, Jiye Liang, Wenping Zheng, Xingwang Zhao, Junfang Mu

Publication date 24 November 2020

Published in Information Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.ins.2019.03.015

zbMATH Keywords

graph clusteringprotein complex detectionprotein interaction networktopological characteristics

Mathematics Subject Classification ID

Connections of general topology with other structures, applications (54H99) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Recommendations

• Predicting protein complexes in weighted dynamic PPI networks based on ICSC
• A novel graph clustering method with a greedy heuristic search algorithm for mining protein complexes from dynamic and static PPI networks
• Protein complex identification based on weighted PPI network with multi-source information
• A network hierarchy-based method for functional module detection in protein-protein interaction networks
• Spectral clustering for detecting protein complexes in protein-protein interaction (PPI) networks

Cites work

• A sequential ensemble clusterings generation algorithm for mixed data
• Collective dynamics of `small-world' networks
• Community structure in social and biological networks
• Emergence of Scaling in Random Networks
• Predicting protein complexes in weighted dynamic PPI networks based on ICSC

Cited in

(16)

• Integration of topological measures for eliminating non-specific interactions in protein interaction networks
• Predicting protein complexes in weighted dynamic PPI networks based on ICSC
• Protein complex identification based on weighted PPI network with multi-source information
• A novel scheme for essential protein discovery based on multi-source biological information
• A survey of computational methods in protein-protein interaction networks
• A novel graph clustering method with a greedy heuristic search algorithm for mining protein complexes from dynamic and static PPI networks
• Bio-entity network for analysis of protein-protein interaction networks
• Towards Detecting Protein Complexes from Protein Interaction Data
• Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
• Identification of the tissue specific protein complexes
• Community detection in disease-gene network based on principal component analysis
• Characterizing network topology of disordered proteins in protein interaction networks
• An application of community structure in complex networks to research on protein folding
• Research in Computational Molecular Biology
• Spectral clustering for detecting protein complexes in protein-protein interaction (PPI) networks
• Link prediction in protein-protein interaction network: a similarity multiplied similarity algorithm with paths of length three

Describes a project that uses

Uses Software

• CFinder
• BioGRID
• MCODE

This page was built for publication: Protein complex detection algorithm based on multiple topological characteristics in PPI networks

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2212571)