Precision assessment of some supervised and unsupervised algorithms for genotype discrimination in the genus \textit{pisum} using SSR molecular data

DOI10.1016/J.JTBI.2015.01.001MaRDI QIDQ1664568zbMATH OpenOpenAlexWikidataFDO

Authors Jaber Nasiri, Mohammad Reza Naghavi, Amir Hossein Kayvanjoo, Mojtaba Nasiri, M. Ebrahimi

Publication date 27 August 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2015.01.001

zbMATH Keywords

data miningmachine learningDNA fingerprintinggenus \textit{Pisum}SSR markers

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

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Cites work

• Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
• Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology
• Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
• Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition
• Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
• Some remarks on protein attribute prediction and pseudo amino acid composition
• iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints

Describes a project that uses

Uses Software

• STRUCTURE
• iRSpot-PseDNC
• iNitro-Tyr
• iNuc-PhysChem
• iEzy-drug
• iCDI-PseFpt
• BAPS 2

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