Antagonism and bistability in protein interaction networks

DOI10.1016/J.JTBI.2007.09.001MaRDI QIDQ1788151zbMATH OpenOpenAlexWikidataFDO

Authors Mohsen Sabouri-Ghomi, Andrea Ciliberto, Sandip Kar, Bela Novak, John J. Tyson

Publication date 8 October 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2007.09.001

zbMATH Keywords

cell cycle controlMichaelis-Menten rate lawstochastic simulation

Mathematics Subject Classification ID

Systems biology, networks (92C42) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

• A model for restriction point control of the mammalian cell cycle
• Extending the quasi-steady state approximation by changing variables
• Mathematical model of the cell division cycle of fission yeast
• The total quasi-steady-state approximation for fully competitive enzyme reactions
• The total quasi-steady-state approximation is valid for reversible enzyme kinetics
• Understanding bistability in complex enzyme-driven reaction networks

Cited in

(15)

• Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights
• Revisiting a skeleton model for the mammalian cell cycle: from bistability to Cdk oscillations and cellular heterogeneity
• Modeling the dynamic behavior of biochemical regulatory networks
• Stochastic Petri net extension of a yeast cell cycle model
• Network resilience
• Structural instability in an autophosphorylating kinase switch
• A study case for the analysis of asymptotic expansions beyond the tQSSA for inhibitory mechanisms in enzyme kinetics.
• New trends and perspectives in nonlinear intracellular dynamics: one century from Michaelis-Menten paper
• Convergence properties of posttranslationally modified protein-protein switching networks with fast decay rates
• scientific article; zbMATH DE number 2064397 (Why is no real title available?)
• Test models for statistical inference: two-dimensional reaction systems displaying limit cycle bifurcations and bistability
• Singular perturbation techniques and asymptotic expansions for some complex enzyme reactions
• Uniform asymptotic expansions beyond the tQSSA for the Goldbeter-Koshland switch
• On the qualitative behaviour of oscillating biochemical systems: the stochastic approach
• Ultrasensitivity and bistability in covalent-modification cycles with positive autoregulation

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