Analyzing the sequence-structure relationship of a library of local structural prototypes

DOI10.1016/J.JTBI.2008.08.032MaRDI QIDQ1798732zbMATH OpenOpenAlexWikidataFDO

Authors Cristina Benros, Alexandre G. de Brevern, Serge Hazout

Publication date 23 October 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2008.08.032

zbMATH Keywords

amino acid equivalence classesprotein local structuresequence-structure correlationstructural alphabetstructural motif library design

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20)

Recommendations

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Cites work

• A Mathematical Theory of Communication
• Natural/random protein classification models based on star network topological indices
• On Information and Sufficiency
• RELATIONS BETWEEN TWO SETS OF VARIATES
• Self-organizing maps.

Cited in

(2)

• Species specific amino acid sequence-protein local structure relationships: an analysis in the light of a structural alphabet
• A Protein Structural Alphabet and Its Substitution Matrix CLESUM

Describes a project that uses

Uses Software

• R
• VMD
• PDB-REPRDB
• PROMOTIF
• MODELLER

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