A time series model of CDS sequences in complete genome

DOI10.1016/S0960-0779(99)00208-8MaRDI QIDQ1868533zbMATH OpenOpenAlexFDO

Authors Zu-Guo Yu, Bin Wang

Publication date 28 April 2003

Published in Chaos, Solitons and Fractals (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/physics/0006080

Mathematics Subject Classification ID

Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Abstract: A time series model of CDS sequences in complete genome is proposed. A map of DNA sequence to integer sequence is given. The correlation dimensions and Hurst exponents of CDS sequences in complete genome of bacteria are calculated. Using the average of correlation dimensions, some interesting results are obtained.

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Cites work

• scientific article; zbMATH DE number 192842 (Why is no real title available?)
• scientific article; zbMATH DE number 193491 (Why is no real title available?)
• Avoided strings in bacterial complete genomes and a related combinatorial problem
• Dimensions of fractals related to languages defined by tagged strings in complete genomes
• Fractals related to long DNA sequences and complete genomes
• Measuring the strangeness of strange attractors

Cited in

(7)

• Roles of genes and Alu repeats in nonlinear correlations of HUMHBB DNA sequence
• Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome
• Correlation dimension and Kolmogorov entropy of DNA sequences
• Fourier transform and mean quadratic variation of Bernoulli convolution on homogeneous Cantor set
• scientific article; zbMATH DE number 5290463 (Why is no real title available?)
• Distance, correlation and mutual information among portraits of organisms based on complete genomes
• Time series model based on global structure of complete genome

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