A memory-efficient finite element method for systems of reaction--diffusion equations with non-smooth forcing

DOI10.1016/J.CAM.2003.12.035MaRDI QIDQ1877189zbMATH OpenOpenAlexFDO

Authors Alexander L. Hanhart, Matthias K. Gobbert, Leighton T. Izu

Publication date 16 August 2004

Published in Journal of Computational and Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cam.2003.12.035

zbMATH Keywords

calcium ions in a human heart cellcluster computingconvergencefinite element methodGalerkin methodmatrix-free iterative methodnon-smooth datanumerical examplesparallel computationreaction-diffusion equation

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Stability and convergence of numerical methods for initial value and initial-boundary value problems involving PDEs (65M12) Finite element, Rayleigh-Ritz and Galerkin methods for initial value and initial-boundary value problems involving PDEs (65M60) Parallel numerical computation (65Y05) Cell movement (chemotaxis, etc.) (92C17) Physiology (general) (92C30)

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Cites work

• A Lumped Mass Finite-element Method with Quadrature for a Non-linear Parabolic Problem
• Bounds for the maximal eigenvalue of a nonnegative irreducible matrix
• Finite elements. Theory, fast solvers, and applications in solid mechanics. Transl. from the German by Larry L. Schumaker.
• scientific article; zbMATH DE number 4076533 (Why is no real title available?)
• scientific article; zbMATH DE number 1077323 (Why is no real title available?)
• scientific article; zbMATH DE number 915500 (Why is no real title available?)
• The lumped mass finite element method for a parabolic problem
• The MATLAB ODE Suite

Cited in

(11)

• Long-time simulations with complex code using multiple nodes of Intel Xeon Phi knights landing
• Linkages of calcium-induced calcium release in a cardiomyocyte simulated by a system of seven coupled partial differential equations
• LDG methods for reaction-diffusion systems with application of Krylov implicit integration factor methods
• Finite element approximations of a nonlinear diffusion model with memory
• A memory saving fast A-EFIE solver for modeling low-frequency large-scale problems
• A memory-efficient finite volume method for advection-diffusion-reaction systems with nonsmooth sources
• A 3D reaction-diffusion system describing calcium dynamics in cardiac cell
• Insight into spontaneous recurrent calcium waves in a 3-D cardiac cell based on analysis of a 1-D deterministic model
• Application of discontinuous Galerkin methods for reaction-diffusion systems in developmental biology
• Finite element approximation for time-dependent diffusion with measure-valued source
• Finite Volume Convergence for a Heat Equation with a Measure-Valued Source

Describes a project that uses

Uses Software

• Matlab
• Ode15s
• ode113
• MATLAB ODE suite
• ode23
• ode45
• ode23s

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