When is a phylogenetic network simply an amalgamation of two trees?

DOI10.1007/S11538-018-0463-XMaRDI QIDQ1990144zbMATH OpenOpenAlexWikidataFDO

Authors Charles Semple, Jack Simpson

Publication date 24 October 2018

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11538-018-0463-x

zbMATH Keywords

phylogenetic networkstree-based networksreticulation-visible networksstack-free networks

Mathematics Subject Classification ID

Applications of graph theory (05C90) Problems related to evolution (92D15)

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Cites work

• A decomposition theorem and two algorithms for reticulation-visible networks
• A universal tree-based network with the minimum number of reticulations
• Do branch lengths help to locate a tree in a phylogenetic network?
• Hybridization number on three rooted binary trees is EPT
• Locating a tree in a phylogenetic network
• New characterisations of tree-based networks and proximity measures
• On the existence of infinitely many universal tree-based networks
• Phylogenetic networks that display a tree twice
• Phylogenetic networks with every embedded phylogenetic tree a base tree
• Reconstructing evolution of sequences subject to recombination using parsimony
• Reticulation-visible networks
• Seeing the trees and their branches in the network is hard
• Size of a phylogenetic network

Cited in

(6)

• Classes of explicit phylogenetic networks and their biological and mathematical significance
• Generation of orchard and tree-child networks
• Reticulation-visible networks
• Phylogenetic networks that are their own fold-ups
• Merging arcs to produce acyclic phylogenetic networks and normal networks
• All that glisters is not galled

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