Phylogenetic networks that display a tree twice

DOI10.1007/S11538-014-0032-XMaRDI QIDQ486637zbMATH OpenOpenAlexWikidataFDO

Authors Paul Cordue, Simone Linz, Charles Semple

Publication date 16 January 2015

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL http://hdl.handle.net/10092/12864

zbMATH Keywords

phylogenetic treephylogenetic networkdisplayingtree-childtree-pathtree-sibling

Mathematics Subject Classification ID

Applications of graph theory (05C90) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Trees (05C05)

Recommendations

• Displaying trees across two phylogenetic networks
• Phylogenetic networks
• Phylogenetic Networks
• Phylogenetic networks that are their own fold-ups
• Phylogenetic networks from multi-labelled trees
• Computational Science – ICCS 2005
• Distinguishing phylogenetic networks
• The space of tree-based phylogenetic networks
• Phylogenetic Networks: Properties and Relationship to Trees and Clusters

Cites work

• Counting phylogenetic networks
• Counting trees in a phylogenetic network is \#P-complete
• Introduction to algorithms
• Locating a tree in a phylogenetic network
• Properties of normal phylogenetic networks
• Seeing the trees and their branches in the network is hard

Cited in

(14)

• When is a phylogenetic network simply an amalgamation of two trees?
• Tree-like reticulation networks -- when do tree-like distances also support reticulate evolution?
• Non-essential arcs in phylogenetic networks
• Classes of explicit phylogenetic networks and their biological and mathematical significance
• Display sets of normal and tree-child networks
• A decomposition theorem and two algorithms for reticulation-visible networks
• Solving the tree containment problem in linear time for nearly stable phylogenetic networks
• Tree-child cluster networks
• Computational Science – ICCS 2005
• Do branch lengths help to locate a tree in a phylogenetic network?
• Phylogenetic Networks: Properties and Relationship to Trees and Clusters
• The SNPR neighbourhood of tree-child networks
• Counting Phylogenetic Networks with Few Reticulation Vertices: Tree-Child and Normal Networks
• Modelling reticulate evolution

Describes a project that uses

Uses Software

• PhyloNetwork

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