Homeostasis and injectivity: a reaction network perspective

DOI10.1007/S00285-022-01795-3MaRDI QIDQ2105800zbMATH OpenOpenAlexWikidataFDO

Authors Abhishek Deshpande, Gheorghe Craciun

Publication date 8 December 2022

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/2105.00088

zbMATH Keywords

homeostasisinjectivityreaction networksdirected species reaction graph

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Toric varieties, Newton polyhedra, Okounkov bodies (14M25) General biology and biomathematics (92B05) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Chemical kinetics in thermodynamics and heat transfer (80A30) Classical flows, reactions, etc. in chemistry (92E20)

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Cites work

• A graph-theoretic condition for delay stability of reaction systems
• A survey of methods for deciding whether a reaction network is multistationary
• Analysis of homeostatic mechanisms in biochemical networks
• Analyzing multistationarity in chemical reaction networks using the determinant optimization method
• Chemical reaction systems with toric steady states
• Design principles for the analysis and construction of robustly homeostatic biological networks
• Escape from homeostasis
• Foundations of chemical reaction network theory
• Graph-theoretic approaches to injectivity and multiple equilibria in systems of interacting elements
• Homeostasis with multiple inputs
• Homeostasis, singularities, and networks
• Infinitesimal homeostasis in three-node input-output networks
• Input-output networks, singularity theory, and homeostasis
• Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
• Nonlinear systems.
• Polynomial dynamical systems, reaction networks, and toric differential inclusions
• Some results on injectivity and multistationarity in chemical reaction networks
• The rational parameterisation theorem for multisite post-translational modification systems
• The structure of MESSI biological systems
• The structure of infinitesimal homeostasis in input-output networks
• Variable elimination in post-translational modification reaction networks with mass-action kinetics

Cited in

(2)

• Analysis of homeostatic mechanisms in biochemical networks
• Homeostasis and injectivity: a reaction network perspective

Describes a project that uses

Uses Software

• MESSI

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