Revisiting moment-closure methods with heterogeneous multiscale population models

DOI10.1016/J.MBS.2022.108866MaRDI QIDQ2164664zbMATH OpenOpenAlexFDO

Authors Davin Lunz, J. Rueß, J. Frédéric Bonnans

Publication date 15 August 2022

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2022.108866

zbMATH Keywords

bioproductionheterogeneous modelsmoment closuremoment hierarchyoptimal controlpopulation models

Mathematics Subject Classification ID

PDEs in connection with biology, chemistry and other natural sciences (35Q92) Cell biology (92C37) Microbiology (92C70) Population dynamics (general) (92D25)

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Cites work

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• A Polyalgorithm for the Numerical Solution of Ordinary Differential Equations
• An extension of the moment closure method
• Approximate Moment Dynamics for Chemically Reacting Systems
• Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
• CasADi: a software framework for nonlinear optimization and optimal control
• Computing the moments of high dimensional solutions of the master equation
• scientific article; zbMATH DE number 3149385 (Why is no real title available?)
• scientific article; zbMATH DE number 3516003 (Why is no real title available?)
• Model Reconstruction for Moment-Based Stochastic Chemical Kinetics
• Moment closure approximations for stochastic kinetic models with rational rate laws
• On continuum approximations of discrete-state Markov processes of large system size
• On the implementation of an interior-point filter line-search algorithm for large-scale nonlinear programming
• Quantitative biology. Theory, computational methods, and models
• Stochastic reaction networks in dynamic compartment populations
• The chemostat. Mathematical theory of microorganism cultures
• The MATLAB ODE Suite

Cited in

(5)

• Robust calibration of hierarchical population models for heterogeneous cell populations
• Optimal control of bioproduction in the presence of population heterogeneity
• Modeling and Optimal Control of a Two-Species Bioproducing Microbial Consortium
• A local polynomial moment approximation for compartmentalized biochemical systems
• A multiscale maximum entropy moment closure for locally regulated space-time point process models of population dynamics

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