Intragenic codon bias in a set of mouse and human genes

DOI10.1016/J.JTBI.2004.05.003MaRDI QIDQ2186472zbMATH OpenOpenAlexWikidataFDO

Authors Dinakar Desai, Kunbo Zhang, Sailen Barik, Alok Srivastava, Mark E. Bolander, Gobinda Sarkar

Publication date 9 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.05.003

zbMATH Keywords

bioinformaticsCAIintragenic codon biasmulticellular organismtrinucleotide repeat

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Computational methods for problems pertaining to biology (92-08) Genetics and epigenetics (92D10)

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(5)

• The level of cytosine is usually much higher than the level of guanine in two-fold degenerated sites from third codon positions of genes from simplex- and varicelloviruses with G+C higher than 50\%
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• Statistical analysis about synonymous codons usage bias
• CodonO: a new informatics method for measuring synonymous codon usage bias within and across genomes
• COMPARING SYNONYMOUS CODON USAGE OF ALTERNATIVELY SPLICED GENES WITH NON-ALTERNATIVELY SPLICED GENES IN HUMAN GENOME

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