A stable finite element method for low inertia undulatory locomotion in three dimensions
From MaRDI portal
Publication:2189705
DOI10.1016/J.APNUM.2020.05.009zbMATH Open1443.74266arXiv1904.01325OpenAlexW3026573060MaRDI QIDQ2189705FDOQ2189705
Publication date: 16 June 2020
Published in: Applied Numerical Mathematics (Search for Journal in Brave)
Abstract: We present and analyse a numerical method for understanding the low-inertia dynamics of an open, inextensible viscoelastic rod - a long and thin three dimensional object - representing the body of a long, thin microswimmer. Our model allows for both elastic and viscous, bending and twisting deformations and describes the evolution of the midline curve of the rod as well as an orthonormal frame which fully determines the rod's three dimensional geometry. The numerical method is based on using a combination of piecewise linear and piecewise constant functions based on a novel rewriting of the model equations. We derive a stability estimate for the semi-discrete scheme and show that at the fully discrete level that we have good control over the length element and preserve the frame orthonormality conditions up to machine precision. Numerical experiments demonstrate both the good properties of the method as well as the applicability of the method for simulating undulatory locomotion in the low-inertia regime.
Full work available at URL: https://arxiv.org/abs/1904.01325
Biomechanical solid mechanics (74L15) Linear constitutive equations for materials with memory (74D05) Rods (beams, columns, shafts, arches, rings, etc.) (74K10) Finite element methods applied to problems in solid mechanics (74S05) Biomechanics (92C10)
Cites Work
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- Algorithm 832
- Inverse problems: a Bayesian perspective
- An algorithm for evolutionary surfaces
- Galerkin finite element methods for parabolic problems
- Kirchhoff's theory of rods
- Evolution of elastic curves in \(\mathbb R^n\): Existence and computation
- Computation of geometric partial differential equations and mean curvature flow
- A discrete geometric approach for simulating the dynamics of thin viscous threads
- Lagrangian Aspects of the Kirchhoff Elastic Rod
- Multi-body dynamics simulation of geometrically exact Cosserat rods
- Flagellar Hydrodynamics
- BIOFLUIDMECHANICS OF REPRODUCTION
- Mechanics of Swimming and Flying
- The vectorial parameterization of rotation
- Error analysis for the elastic flow of parametrized curves
- Parametric approximation of isotropic and anisotropic elastic flow for closed and open curves
- PASSIVE AND ACTIVE FLOW CONTROL BY SWIMMING FISHES AND MAMMALS
- Slender-body theory for slow viscous flow
- The action of waving cylindrical tails in propelling microscopic organisms
- Dynamic supercoiling bifurcations of growing elastic filaments
- Modelling biological and bio-inspired swimming at microscopic scales: recent results and perspectives
- On the Geometric Flow of Kirchhoff Elastic Rods
- An energy conserving numerical scheme for the dynamics of hyperelastic rods
- Dynamical problems for geometrically exact theories of nonlinearly viscoelastic rods
- Numerical aspects in the dynamic simulation of geometrically exact rods
- The approximation of planar curve evolutions by stable fully implicit finite element schemes that equidistribute
- A simple scheme for the approximation of the elastic flow of inextensible curves
- Super space clothoids
- Bacterial hydrodynamics
- On algorithms with good mesh properties for problems with moving boundaries based on the Harmonic Map Heat Flow and the DeTurck trick
- Regularized Stokeslet segments
Cited In (8)
- An approach to the modelling of worm-like motion systems with finite degree of freedom - First steps in technical realization
- Computing confined elasticae
- Adjoint-based optimal control of contractile elastic bodies. Application to limbless locomotion on frictional substrates
- A monolithic optimal control method for displacement tracking of Cosserat rod with application to reconstruction of \textit{C. elegans} locomotion
- Numerical solution of a bending-torsion model for elastic rods
- Motion by mean curvature with constraints using a modified Allen-Cahn equation
- Stabilization of periodic sweeping processes and asymptotic average velocity for soft locomotors with dry friction
- A finite element method for simulating soft active non-shearable rods immersed in generalized Newtonian fluids
This page was built for publication: A stable finite element method for low inertia undulatory locomotion in three dimensions
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2189705)
