Symmetries by base substitutions in the genetic code predict 2^ or 3^ aminoacylation of tRNAs

DOI10.1016/J.JTBI.2007.03.008MaRDI QIDQ2219726zbMATH OpenOpenAlexWikidataFDO

Authors Jean-Luc Jestin, Christophe Soulé

Publication date 21 January 2021

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/0704.0331

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Abstract: This letter reports complete sets of two-fold symmetries between partitions of the universal genetic code. By substituting bases at each position of the codons according to a fixed rule, it happens that properties of the degeneracy pattern or of tRNA aminoacylation specificity are exchanged.

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Cites work

• A stochastic gene evolution model with time dependent mutations
• Genetic code from tRNA point of view
• On the 28-gon symmetry inherent in the genetic code intertwined with aminoacyl-tRNA synthetases -- the Lucas series
• The case for an error minimizing set of coding amino acids

Cited in

(15)

• 2-adic clustering of the PAM matrix
• Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion
• Numeral series hidden in the distribution of atomic mass of amino acids to codon domains in the genetic code
• The rules of variation: amino acid exchange according to the rotating circular genetic code
• Evolution of the genetic code based on conservative changes of codons, amino acids, and aminoacyl tRNA synthetases
• Aminoacyl-tRNA synthetase classes and groups in prokaryotes
• A periodic table for genetic codes
• The novel ideal symmetry genetic code table -- common purine-pyrimidine symmetry net for all RNA and DNA species
• Folding of small RNAs displaying the GNC base-pattern: implications for the self-organization of the genetic system
• Mechanism of translation based on intersubunit complementarities of ribosomal RNAs and tRNAs
• Match fitness landscapes for macromolecular interaction networks: selection for translational accuracy and rate can displace tRNA-binding interfaces of non-cognate aminoacyl-tRNA synthetases
• On the 28-gon symmetry inherent in the genetic code intertwined with aminoacyl-tRNA synthetases -- the Lucas series
• On dichotomic classes and bijections of the genetic code
• Putative anticodons in mitochondrial trna sidearm loops: pocketknife tRNAs?
• Protein-RNA recognition: cracking the code

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