Spike-and-slab Lasso biclustering

DOI10.1214/20-AOAS1385MaRDI QIDQ2233147zbMATH OpenOpenAlexFDO

Authors Gemma E. Moran, Veronika Rockova, Edward I. George

Publication date 14 October 2021

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1214/20-aoas1385

zbMATH Keywords

Bayesbiclusteringfactor analysishierarchical modelingspike-and-slab Lassovariable selection

Mathematics Subject Classification ID

Bayesian inference (62F15) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Ridge regression; shrinkage estimators (Lasso) (62J07) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• Bayesian estimation of sparse signals with a continuous spike-and-slab prior
• Bayesian linear regression with sparse priors
• Clustering Objects on Subsets of Attributes (with Discussion)
• Computational neuroscience
• Data mining in agriculture
• Finding large average submatrices in high dimensional data
• Gene expression distribution deconvolution in single-cell RNA sequencing
• scientific article; zbMATH DE number 1750182 (Why is no real title available?)
• scientific article; zbMATH DE number 3349081 (Why is no real title available?)
• Needles and straw in a haystack: posterior concentration for possibly sparse sequences
• Simultaneous Variable and Covariance Selection With the Multivariate Spike-and-Slab LASSO
• Spike-and-Slab Group Lassos for Grouped Regression and Sparse Generalized Additive Models
• The horseshoe estimator for sparse signals
• The Indian buffet process: an introduction and review
• The maximum edge biclique problem is NP-complete
• The spike-and-slab LASSO
• The varimax criterion for analytic rotation in factor analysis
• Variance prior forms for high-dimensional Bayesian variable selection

Cited in

(13)

• Biclustering via structured regularized matrix decomposition
• Profile likelihood biclustering
• Biclustering via sparse singular value decomposition
• Biclustering via sparse clustering
• SSLB
• Uncovering block structures in large rectangular matrices
• Co-clustering of spatially resolved transcriptomic data
• Comment: Regularization via Bayesian Penalty Mixing
• Estimating sparse direct effects in multivariate regression with the spike-and-slab LASSO
• Posterior contraction and uncertainty quantification for the multivariate spike-and-slab LASSO
• Outcome-guided spike-and-slab Lasso biclustering: a novel approach for enhancing biclustering techniques for gene expression analysis
• Toward Interpretable Deep Generative Models via Causal Representation Learning
• Knowledge-guided Bayesian biclustering model for omics data with noisy graphs

Describes a project that uses

Uses Software

• LAS
• COSA
• FABIA
• breastCancerNKI
• clusterProfiler
• GitHub

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