Spike-and-slab Lasso biclustering

DOI10.1214/20-AOAS1385MaRDI QIDQ2233147zbMATH OpenOpenAlexFDO

Authors Gemma E. Moran, Veronika Rockova, Edward I. George

Publication date 14 October 2021

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1214/20-aoas1385

zbMATH Keywords

variable selectionfactor analysisBayesbiclusteringhierarchical modelingspike-and-slab Lasso

Mathematics Subject Classification ID

Bayesian inference (62F15) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Ridge regression; shrinkage estimators (Lasso) (62J07)

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Cites work

• scientific article; zbMATH DE number 1750182 (Why is no real title available?)
• scientific article; zbMATH DE number 3349081 (Why is no real title available?)
• Bayesian estimation of sparse signals with a continuous spike-and-slab prior
• Bayesian linear regression with sparse priors
• Clustering Objects on Subsets of Attributes (with Discussion)
• Computational neuroscience
• Data mining in agriculture
• Finding large average submatrices in high dimensional data
• Gene expression distribution deconvolution in single-cell RNA sequencing
• Needles and straw in a haystack: posterior concentration for possibly sparse sequences
• Simultaneous Variable and Covariance Selection With the Multivariate Spike-and-Slab LASSO
• Spike-and-Slab Group Lassos for Grouped Regression and Sparse Generalized Additive Models
• The Indian buffet process: an introduction and review
• The horseshoe estimator for sparse signals
• The maximum edge biclique problem is NP-complete
• The spike-and-slab LASSO
• The varimax criterion for analytic rotation in factor analysis
• Variance prior forms for high-dimensional Bayesian variable selection

Cited in

(8)

• Biclustering via sparse clustering
• Co-clustering of spatially resolved transcriptomic data
• Biclustering via structured regularized matrix decomposition
• Profile likelihood biclustering
• SSLB
• Comment: Regularization via Bayesian Penalty Mixing
• Uncovering block structures in large rectangular matrices
• Biclustering via sparse singular value decomposition

Describes a project that uses

Uses Software

• GitHub
• clusterProfiler
• breastCancerNKI
• FABIA
• COSA
• LAS

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