Identifying QTLs and epistasis in structured plant populations using adaptive mixed LASSO

DOI10.1007/S13253-010-0046-2MaRDI QIDQ2260993zbMATH OpenOpenAlexWikidataFDO

Authors Dong Wang, Kent M. Eskridge, Jose Crossa

Publication date 6 March 2015

Published in Journal of Agricultural, Biological and Environmental Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s13253-010-0046-2

zbMATH Keywords

oracle propertypenalized regressionshrinkage estimationassociation analysisplant breeding

Mathematics Subject Classification ID

Applications of statistics to environmental and related topics (62P12)

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Cites work

• scientific article; zbMATH DE number 845714 (Why is no real title available?)
• A Model Selection Approach for the Identification of Quantitative Trait Loci in Experimental Crosses
• An Empirical Bayes Method for Estimating Epistatic Effects of Quantitative Trait Loci
• Extended Bayesian information criteria for model selection with large model spaces
• Fixed and Random Effects Selection in Mixed Effects Models
• Genomic Control for Association Studies
• Incorporating LASSO effects into a mixed model for quantitative trait loci detection
• Joint variable selection for fixed and random effects in linear mixed-effects models
• Least angle regression. (With discussion)
• Pathwise coordinate optimization
• Sparsity and Smoothness Via the Fused Lasso
• Spatial smoothing and hot spot detection for CGH data using the fused lasso
• The Adaptive Lasso and Its Oracle Properties
• The Bayesian Lasso

Cited in

(6)

• Model selection in linear mixed models
• Regression-based multi-trait QTL mapping using a structural equation model
• A Bayesian hierarchical model for identifying significant polygenic effects while controlling for confounding and repeated measures
• Variable selection for generalized linear mixed models by \(L_1\)-penalized estimation
• Subset Selection for Linear Mixed Models
• Analysis of phenotypic- and estimated breeding values (EBV) to dissect the genetic architecture of complex traits in a Scots pine three-generation pedigree design

Describes a project that uses

Uses Software

• Eigenstrat
• STRUCTURE
• ElemStatLearn

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