Combinatorial properties of phylogenetic diversity indices

DOI10.1007/S00285-019-01438-0MaRDI QIDQ2299262zbMATH OpenOpenAlexWikidataFDO

Authors Kristina Wicke, Mike Steel

Publication date 21 February 2020

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1902.02463

zbMATH Keywords

phylogenetic treeShapley valuebiodiversity measuresdiversity index

Mathematics Subject Classification ID

Problems related to evolution (92D15) Cooperative games (91A12) Applications of game theory (91A80)

Abstract: Phylogenetic diversity indices provide a formal way to apportion 'evolutionary heritage' across species. Two natural diversity indices are Fair Proportion (FP) and Equal Splits (ES). FP is also called 'evolutionary distinctiveness' and, for rooted trees, is identical to the Shapley Value (SV), which arises from cooperative game theory. In this paper, we investigate the extent to which FP and ES can differ, characterise tree shapes on which the indices are identical, and study the equivalence of FP and SV and its implications in more detail. We also define and investigate analogues of these indices on unrooted trees (where SV was originally defined), including an index that is closely related to the Pauplin representation of phylogenetic diversity.

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Cited in

(17)

• The fair proportion is a Shapley value on phylogenetic networks too
• scientific article; zbMATH DE number 5713387 (Why is no real title available?)
• Revisiting Shao and Sokal's \(B_2\) index of phylogenetic balance
• The robustness of phylogenetic diversity indices to extinctions
• Resource-based corruptions and the combinatorics of hidden diversity
• Spaces of phylogenetic diversity indices: combinatorial and geometric properties
• Computing additive \(\beta \)-diversity from presence and absence scores: a critique and alternative parameters
• The combinatorics of hidden diversity
• The equivalence of two phylogenetic biodiversity measures: the Shapley value and fair proportion index
• Combinatorial views on persistent characters in phylogenetics
• The link between segregation and phylogenetic diversity
• Biodiversity, Shapley value and phylogenetic trees: some remarks
• Effects of discordance between species and gene trees on phylogenetic diversity conservation
• Phylogenetic diversity and biodiversity indices on phylogenetic networks
• Phylogenetic diversity indices from an affine and projective viewpoint
• Mathematical indices for the influence of risk factors on the lethality of a disease
• Quantifying the difference between phylogenetic diversity and diversity indices

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