netprioR: a probabilistic model for integrative hit prioritisation of genetic screens

DOI10.1515/SAGMB-2018-0033MaRDI QIDQ2324975zbMATH OpenOpenAlexWikidataFDO

Authors Fabian Schmich, Jack Kuipers, Gunter Merdes, Niko Beerenwinkel

Publication date 12 September 2019

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/sagmb-2018-0033

zbMATH Keywords

EMexpectation maximizationgeneticGMRFhit prioritizationmodelprobabilisticscreen

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

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Cites work

• Gaussian Markov Random Fields
• Pattern recognition and machine learning.
• The Bayesian Lasso

Cited in

(3)

• Gene set priorization guided by regulatory networks with p-values through kernel mixed model
• NetMix2: unifying network propagation and altered subnetworks
• netprioR

Describes a project that uses

Uses Software

• R
• GMRFLib
• GeneMANIA
• PRMLT
• ToppGene Suite
• gespeR

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