Spatio-temporal model for multiple ChIP-seq experiments

DOI10.1515/SAGMB-2014-0074zbMATH Open1311.62165OpenAlexW1559787972WikidataQ41290920 ScholiaQ41290920MaRDI QIDQ2344259FDOQ2344259

Authors: Saverio Ranciati, Cinzia Viroli, Ernst C. Wit 

Publication date: 13 May 2015

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2014-0074

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zbMATH Keywords

MCMCMarkov random field modelmixture distributionsChIP-seq

Mathematics Subject Classification ID

Random fields; image analysis (62M40) General biostatistics (92B15)

Cites Work

• Negative Binomial Regression
• Title not available (Why is that?)
• Title not available (Why is that?)
• Markov random fields and their applications
• A statistical framework for the analysis of ChIP-seq data

Cited In (4)

• A new approach for the joint analysis of multiple ChIP-Seq libraries with application to histone modification
• PICS: Probabilistic Inference for ChIP-seq
• Modeling and Analysis of Multi‐Library, Multi‐Group SAGE Data with Application to a Study of Mouse Cerebellum
• Mixture model with multiple allocations for clustering spatially correlated observations in the analysis of ChIP-Seq data

Uses Software

• BayesPeak
• COUNT
• HPeak

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