Crystal basis model: codon-anticodon interaction and genetic code evolution

DOI10.1134/S2070046614040013MaRDI QIDQ2354804zbMATH OpenFDO

Authors A. Sciarrino, P. Sorba

Publication date 27 July 2015

Published in \(p\)-Adic Numbers, Ultrametric Analysis, and Applications (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1406.1445

zbMATH Keywords

anticodoncodongenetic code

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Abstract: Imposing a minimum principle in the framework of the so called crystal basis model of the genetic code, we determine the structure of the minimum set of 22 anticodons which allows the translational-transcription for animal mitochondrial code. The results are in very good agreement with the observed anticodons. Then, we analyze the evolution of the genetic code, with 20 amino acids encoded from the beginning, from the viewpoint of codon-anticodon interaction. Following the same spirit as above, we determine the structure of the anticodons in the Ancient, Archetypal and Early Genetic codes. Most of our results agree with the generally accepted scheme.

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Cites work

• A \(p\)-adic model of DNA sequence and genetic code
• Crystal basis model: codon-anticodon interaction and genetic code evolution
• Crystalizing the q-analogue of universal enveloping algebras
• Quantum groups and the genetic code

Cited in

(8)

• A geometric model for codon recognition logic
• Evolution of the genetic code based on conservative changes of codons, amino acids, and aminoacyl tRNA synthetases
• Sum rules for codon usage probabilities
• Translocation properties of primitive molecular machines and their relevance to the structure of the genetic code
• Classification of the possible pairs between the first anticodon and the third codon positions based on a simple model assuming two geometries with which the pairing effectively potentiates the decoding complex
• Crystal basis model: codon-anticodon interaction and genetic code evolution
• Crystal basis model of the genetic code: structure and consequences
• Symmetry and minimum principle at the basis of the genetic code

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