Efficient computation in the IM model

DOI10.1007/s00285-013-0671-9zbMath1284.92062WikidataQ43419400 ScholiaQ43419400MaRDI QIDQ2447558

Thomas Mailund, Lars Nørvang Andersen, Asger Hobolth

Publication date: 28 April 2014

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-013-0671-9

zbMATH Keywords

maximum likelihood; speciation; coalescence theory; gene flows; isolation-with-migration

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

92D15: Problems related to evolution

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

92-08: Computational methods for problems pertaining to biology

Related Items

Inference of gene flow in the process of speciation: efficient maximum-likelihood implementation of a generalised isolation-with-migration model, Genealogical histories in structured populations

Cites Work

• The distribution of the coalescence time and the number of pairwise nucleotide differences in the ``isolation with migration model
• The mutation process in colored coalescent theory
• The coalescent
• Markov chain models - rarity and exponentiality
• Divergence time and population size in the lineage leading to modern humans
• The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow
• Matrix Analysis
• Exact and ordinary lumpability in finite Markov chains
• Applied Probability and Queues
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