Efficient computation in the IM model

DOI10.1007/S00285-013-0671-9MaRDI QIDQ2447558zbMATH OpenOpenAlexWikidataFDO

Authors Lars Nørvang Andersen, Thomas Mailund, Asger Hobolth

Publication date 28 April 2014

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-013-0671-9

zbMATH Keywords

coalescence theorygene flowsisolation-with-migrationmaximum likelihoodspeciation

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Applications of statistics to biology and medical sciences; meta analysis (62P10) Computational methods for problems pertaining to biology (92-08) Problems related to evolution (92D15)

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Cites work

• Applied Probability and Queues
• Divergence time and population size in the lineage leading to modern humans
• Exact and ordinary lumpability in finite Markov chains
• scientific article; zbMATH DE number 6016068 (Why is no real title available?)
• scientific article; zbMATH DE number 3145626 (Why is no real title available?)
• scientific article; zbMATH DE number 4048080 (Why is no real title available?)
• scientific article; zbMATH DE number 3596007 (Why is no real title available?)
• Markov chain models - rarity and exponentiality
• Matrix Analysis
• The coalescent
• The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow
• The distribution of the coalescence time and the number of pairwise nucleotide differences in the ``isolation with migration model
• The mutation process in colored coalescent theory

Cited in

(4)

• Efficient input-output model representations
• Inference of gene flow in the process of speciation: efficient maximum-likelihood implementation of a generalised isolation-with-migration model
• Rates of convergence in the two-island and isolation-with-migration models
• Genealogical histories in structured populations

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