The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods

DOI10.1016/J.COMPBIOLCHEM.2004.09.005MaRDI QIDQ2490551zbMATH OpenOpenAlexWikidataFDO

Authors Yanyan Li

Publication date 16 May 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2004.09.005

zbMATH Keywords

Dynamic programmingLocal weightingOptimal segmentationPrediction optimizationProtein secondary structure prediction

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Dynamic programming (90C39)

Recommendations

• Toward an accurate statistics of gapped alignments
• Multiple alignment of biological sequences with gap flexibility
• Transactions on Computational Systems Biology III
• Global and local sequence alignment with a bounded number of gaps
• New approximate \(P\)-value of gapped local sequence alignments

Cites work

• The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods

Cited in

(3)

• Transactions on Computational Systems Biology III
• The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods
• Gaps and Runs in Syntenic Alignments

Describes a project that uses

Uses Software

• PSI-BLAST
• BLAST
• JPred

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