The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods

DOI10.1016/J.COMPBIOLCHEM.2004.09.005zbMATH Open1089.92017OpenAlexW2020438176WikidataQ51983792 ScholiaQ51983792MaRDI QIDQ2490551FDOQ2490551

Authors: Yanyan Li 

Publication date: 16 May 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2004.09.005

Recommendations

• Toward an accurate statistics of gapped alignments
• Multiple alignment of biological sequences with gap flexibility
• Transactions on Computational Systems Biology III
• Global and local sequence alignment with a bounded number of gaps
• New approximate \(P\)-value of gapped local sequence alignments

zbMATH Keywords

Dynamic programmingLocal weightingOptimal segmentationPrediction optimizationProtein secondary structure prediction

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Dynamic programming (90C39)

Cites Work

• The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods

Cited In (3)

• Gaps and Runs in Syntenic Alignments
• Transactions on Computational Systems Biology III
• The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods

Uses Software

• PSI-BLAST
• BLAST
• JPred

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