A survey on piecewise-linear models of regulatory dynamical systems

DOI10.1016/J.NA.2005.04.041MaRDI QIDQ2568094zbMATH OpenOpenAlexFDO

Authors Hakan Öktem

Publication date 7 October 2005

Published in Nonlinear Analysis. Theory, Methods \& Applications. Series A: Theory and Methods (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.na.2005.04.041

zbMATH Keywords

Boolean networkscomplex networkshybrid systemspiecewise-linear systemsregulatory dynamics

Mathematics Subject Classification ID

Discrete event control/observation systems (93C65)

Recommendations

• Nonlinear perturbations of piecewise-linear systems with delay and applications to gene regulatory networks
• Hybrid models of genetic networks: mathematical challenges and biological relevance
• Piecewise-linear models of genetic regulatory networks: equilibria and their stability
• Discrete time piecewise affine models of genetic regulatory networks
• Modeling gene regulatory networks with piecewise linear differential equations

Cites work

• A Boolean delay equation model of colliding cascades. II: Prediction of critical transitions
• An adjustable aperiodic model class of genomic interactions using continuous time Boolean networks (Boolean delay equations)
• Boolean Difference Equations, I: Formulation and Dynamic Behavior
• Combinatorial explosion in model gene networks.
• Continuous genetic networks
• Empirical-Bias Bandwidths for Local Polynomial Nonparametric Regression and Density Estimation
• scientific article; zbMATH DE number 3858920 (Why is no real title available?)
• scientific article; zbMATH DE number 1480198 (Why is no real title available?)
• scientific article; zbMATH DE number 2154158 (Why is no real title available?)
• scientific article; zbMATH DE number 3444596 (Why is no real title available?)
• scientific article; zbMATH DE number 2219890 (Why is no real title available?)
• Multistationarity, the basis of cell differentiation and memory. I: Structural conditions of multistationarity and other nontrivial behavior
• Multistationarity, the basis of cell differentiation and memory. II: Logical analysis of regulatory networks in terms of feedback circuits
• Numerical investigation of the pantograph equation
• On the regularization of Zeno hybrid automata

Cited in

(13)

• Resonant filtering of compositional waves in multicellular networks
• Optimization of gene-environment networks in the presence of errors and uncertainty with Chebychev approximation
• On optimization, dynamics and uncertainty: A tutorial for gene-environment networks
• Coarse-grained optimization-driven design and piecewise linear modeling of synthetic genetic circuits
• On generalized semi-infinite optimization of genetic networks
• Some stochastic gradient algorithms for Hammerstein systems with piecewise linearity
• Mathematical contributions to dynamics and optimization of gene-environment networks
• An algorithmic approach to analyse genetic networks and biological energy production: an introduction and contribution where OR meets biology†
• Dynamic information handling in continuous time Boolean network model of gene interactions
• Effective parameters determining the information flow in hierarchical biological systems
• Three modeling paradigms in mathematical programming
• A survey on OR and mathematical methods applied on gene-environment networks
• An improved method for inference of piecewise linear systems by detecting jumps using derivative estimation

This page was built for publication: A survey on piecewise-linear models of regulatory dynamical systems

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2568094)