Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance

DOI10.1016/J.JTBI.2014.01.022MaRDI QIDQ2632636zbMATH OpenOpenAlexWikidataFDO

Authors Chenglong Yu, Rong Lucy He, Stephen Yau

Publication date 15 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2014.01.022

zbMATH Keywords

global comparisonmulti-segmentedsingle-segmentedvirus classification

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Complexity classes (hierarchies, relations among complexity classes, etc.) (68Q15)

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Cites work

• A universal algorithm for sequential data compression

Cited in

(7)

• A new method for analyzing H5N1 avian influenza virus
• Magnus representation of genome sequences
• Euclidean distance analysis enables nucleotide skew analysis in viral genomes
• Convex hull analysis of evolutionary and phylogenetic relationships between biological groups
• Whole-genome phylogeny of giant viruses by Fourier transform
• Virus classification based on Q-vectors
• Biomolecular topology: modelling and analysis

Describes a project that uses

Uses Software

• MEGA

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