Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance

DOI10.1016/J.JTBI.2014.01.022zbMATH Open1412.92234OpenAlexW2116587778WikidataQ42239690 ScholiaQ42239690MaRDI QIDQ2632636FDOQ2632636

Authors: Chenglong Yu, Rong Lucy He, Stephen Yau 

Publication date: 15 May 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2014.01.022

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zbMATH Keywords

global comparisonmulti-segmentedsingle-segmentedvirus classification

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Complexity classes (hierarchies, relations among complexity classes, etc.) (68Q15)

Cites Work

• A universal algorithm for sequential data compression

Cited In (7)

• A new method for analyzing H5N1 avian influenza virus
• Magnus representation of genome sequences
• Euclidean distance analysis enables nucleotide skew analysis in viral genomes
• Convex hull analysis of evolutionary and phylogenetic relationships between biological groups
• Whole-genome phylogeny of giant viruses by Fourier transform
• Virus classification based on Q-vectors
• Biomolecular topology: modelling and analysis

Uses Software

• MEGA

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