Experimental design for biological systems
DOI10.1137/100791063zbMATH Open1243.93130OpenAlexW1994613299MaRDI QIDQ2884604FDOQ2884604
Authors: Matthias Chung, Eldad Haber 
Publication date: 30 May 2012
Published in: SIAM Journal on Control and Optimization (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1137/100791063
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parameter estimationexperimental designdynamical systemsoptimal experimental designinverse problemsordinary differential equationbilevel optimizationbiological applicationssystem biology
Optimal statistical designs (62K05) Empirical decision procedures; empirical Bayes procedures (62C12) Nonlinear programming (90C30) Stochastic programming (90C15) Inverse problems in optimal control (49N45) General biology and biomathematics (92B05) Optimal stochastic control (93E20) Stochastic learning and adaptive control (93E35) Numerical solution of inverse problems involving ordinary differential equations (65L09)
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- A sparse control approach to optimal sensor placement in PDE-constrained parameter estimation problems
- Bayesian optimal design for ordinary differential equation models with application in biological science
- Optimal experimental design for infinite-dimensional Bayesian inverse problems governed by PDEs: a review
- A global parallel model based design of experiments method to minimize model output uncer\-tainty
- Maximizing algebraic connectivity for certain families of graphs
- A Fast and Scalable Method for A-Optimal Design of Experiments for Infinite-dimensional Bayesian Nonlinear Inverse Problems
- Optimal experimental design for inverse problems with state constraints
- Goal-oriented optimal design of experiments for large-scale Bayesian linear inverse problems
- How to choose biomarkers in view of parameter estimation
- Prediction uncertainty and optimal experimental design for learning dynamical systems
- Graph problems arising from parameter identification of discrete dynamical systems
- Optimal spatial monitoring of populations described by reaction-diffusion models
- Parameter and uncertainty estimation for dynamical systems using surrogate stochastic processes
- Robust optimal experimental design for model discrimination of kinetic ODE systems
- Optimal design of non-equilibrium experiments for genetic network interrogation
- Influence of non-linearity to the Optimal Experimental Design demonstrated by a biological system
- Experimental design for dynamics identification of cellular processes
- Least-squares finite element method for ordinary differential equations
- Experimental design and inverse problems in plant biological modeling
- Deep reinforcement learning in finite-horizon to explore the most probable transition pathway
- Identification of microbiota dynamics using robust parameter estimation methods
- Efficient D-optimal design of experiments for infinite-dimensional Bayesian linear inverse problems
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