Parameter and Uncertainty Estimation for Dynamical Systems Using Surrogate Stochastic Processes

DOI10.1137/18M1213403zbMath1420.60047arXiv1802.00852OpenAlexW2963448428WikidataQ91366879 ScholiaQ91366879MaRDI QIDQ5230651

Matthias Chung, Johnathan M. Bardsley, Robert B. Gramacy, Amanda Smith, Amber M. Smith, David J. Moquin, Mickaël Binois

Publication date: 28 August 2019

Published in: SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1802.00852

zbMATH Keywords

parameter estimationdynamical systemsGaussian processinverse problemsuncertainty estimationviral kinetic model

Mathematics Subject Classification ID

Gaussian processes (60G15) Point estimation (62F10) Bayesian inference (62F15) Numerical methods for initial value problems involving ordinary differential equations (65L05) Computational methods for problems pertaining to biology (92-08) Numerical solution of inverse problems involving ordinary differential equations (65L09)

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Uses Software

• RODAS
• UTV
• deGradInfer
• MATCH Uncertainty Elicitation
• hetGP

Cites Work

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• Optimization by Simulated Annealing
• Practical Heteroscedastic Gaussian Process Modeling for Large Simulation Experiments
• An accurate two-phase approximate solution to an acute viral infection model
• Identification of microbiota dynamics using robust parameter estimation methods
• Optimal design for correlated processes with input-dependent noise
• A methodology for performing global uncertainty and sensitivity analysis in systems biology
• Bayesian Calibration of Computer Models
• Experimental Design for Biological Systems
• Stochastic Kriging for Simulation Metamodeling
• Solving Ordinary Differential Equations I
• Bootstrapping State-Space Models: Gaussian Maximum Likelihood Estimation and the Kalman Filter
• Rank-Deficient and Discrete Ill-Posed Problems
• Combining Field Data and Computer Simulations for Calibration and Prediction
• Computational Methods for Inverse Problems
• Parameter Estimation for Differential Equations: a Generalized Smoothing Approach
• Data Assimilation
• Data Assimilation
• An Introduction to Data Analysis and Uncertainty Quantification for Inverse Problems
• A Nonstationary Space-Time Gaussian Process Model for Partially Converged Simulations
• Introduction to Bayesian Scientific Computing
• Monte Carlo sampling methods using Markov chains and their applications

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