Logistic Bayesian LASSO for identifying association with rare haplotypes and application to age-related macular degeneration

DOI10.1111/J.1541-0420.2011.01680.XMaRDI QIDQ2912358zbMATH OpenOpenAlexWikidataFDO

Authors Swati Biswas, Shili Lin

Publication date 14 September 2012

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/j.1541-0420.2011.01680.x

zbMATH Keywords

regularizationrare variantsGWASmissing heritabilityretrospective likelihoodcombination of common SNPscomplement factor H gene

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• scientific article; zbMATH DE number 845714 (Why is no real title available?)
• A Bayesian Formulation of Exploratory Data Analysis and Goodness‐of‐fit Testing*
• Logistic disease incidence models and case-control studies
• The Bayesian Lasso

Cited in

(12)

• Multivariate sparse group Lasso for the multivariate multiple linear regression with an arbitrary group structure
• LASSO-pattern search algorithm with application to ophthalmology and genomic data
• Multiple imputation for longitudinal data using Bayesian Lasso imputation model
• A Bayes factor approach with informative prior for rare genetic variant analysis from next generation sequencing data
• Bayesian penalized cumulative logit model for high-dimensional data with an ordinal response
• Detecting rare haplotype association with two correlated phenotypes of binary and continuous types
• A novel association test for rare variants based on algebraic statistics
• Gene-based association testing of dichotomous traits with generalized functional linear mixed models using extended pedigrees: applications to age-related macular degeneration
• Detecting rare and common haplotype-environment interaction under uncertainty of gene-environment independence assumption
• Feature selection by canonical correlation search in high-dimensional multiresponse models with complex group structures
• Bayesian LASSO for population stratification correction in rare haplotype association studies
• A new Bayesian Lasso and ridge regression with a practically meaningful parameterization and a simple weakly informative prior

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