A free energy satisfying finite difference method for Poisson-Nernst-Planck equations

DOI10.1016/J.JCP.2014.02.036MaRDI QIDQ349075zbMATH OpenOpenAlexFDO

Authors Zhongming Wang, Hailiang Liu

Publication date 5 December 2016

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1308.6632

zbMATH Keywords

free energyPoisson equationpositivityNernst-Planck equation

Mathematics Subject Classification ID

Initial-boundary value problems for mixed-type systems of PDEs (35M33) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06)

Abstract: In this work we design and analyze a free energy satisfying finite difference method for solving Poisson-Nernst-Planck equations in a bounded domain. The algorithm is of second order in space, with numerical solutions satisfying all three desired properties: i) mass conservation, ii) positivity preserving, and iii) free energy satisfying in the sense that these schemes satisfy a discrete free energy dissipation inequality. These ensure that the computed solution is a probability density, and the schemes are energy stable and preserve the equilibrium solutions. Both one and two-dimensional numerical results are provided to demonstrate the good qualities of the algorithm, as well as effects of relative size of the data given.

Recommendations

• An energy preserving finite difference scheme for the Poisson-Nernst-Planck system
• A positivity preserving and free energy dissipative difference scheme for the Poisson-Nernst-Planck system
• A free energy satisfying discontinuous Galerkin method for one-dimensional Poisson-Nernst-Planck systems
• Difference/spectral methods for Nernst-Planck-Poisson equation
• A fully discrete positivity-preserving and energy-dissipative finite difference scheme for Poisson-Nernst-Planck equations
• A multigrid method for the Poisson-Nernst-Planck equations
• A positivity-preserving and free energy dissipative hybrid scheme for the Poisson-Nernst-Planck equations on polygonal and polyhedral meshes
• Nonconforming finite element method for coupled <scp>Poisson–Nernst–Planck</scp> equations
• A finite volume scheme for Nernst-Planck-Poisson systems with ion size and solvation effects
• A weak Galerkin finite element method for time-dependent Poisson-Nernst-Planck equations

Cites work

• scientific article; zbMATH DE number 108361 (Why is no real title available?)
• A nonlocal continuum model for biological aggregation
• An entropy satisfying conservative method for the Fokker-Planck equation of the finitely extensible nonlinear elastic dumbbell model
• Consistency of Semiconductor Modeling: An Existence/Stability Analysis for the Stationary Van Roosbroeck System
• Continuum electrostatics for ionic solutions with non-uniform ionic sizes
• Critical mass for a Patlak-Keller-Segel model with degenerate diffusion in higher dimensions
• Large time behavior of nonlocal aggregation models with nonlinear diffusion
• Local and global well-posedness for aggregation equations and Patlak-Keller-Segel models with degenerate diffusion
• Long time behavior of solutions of Nernst-Planck and Debye-Hückel drift-diffusion systems
• Minimization of Electrostatic Free Energy and the Poisson–Boltzmann Equation for Molecular Solvation with Implicit Solvent
• New Poisson-Boltzmann type equations: one-dimensional solutions
• On an aggregation model with long and short range interactions
• On large time asymptotics for drift-diffusion-poisson systems
• On the Discretization of van Roosbroeck's Equations with Magnetic Field
• Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes. I: Finite element solutions
• Second-order Poisson-Nernst-Planck solver for ion transport
• The entropy satisfying discontinuous Galerkin method for Fokker-Planck equations
• Variational multiscale models for charge transport

Cited in

(52)

• Convergence and superconvergence analysis for a mass conservative, energy stable and linearized BDF2 scheme of the Poisson-Nernst-Planck equations
• An efficient finite element solver for a nonuniform size-modified Poisson-Nernst-Planck ion channel model
• An efficient unconditional energy-stable finite element method for the electro-hydrodynamic equations
• An inverse averaging finite element method for solving the size-modified Poisson-Nernst-Planck equations in ion channel simulations
• A structure-preserving implicit exponential time differencing scheme for Maxwell-Ampère Nernst-Planck model
• Unconditional Positivity-Preserving and Energy StableSchemesforaReducedPoisson-Nernst-Planck System
• Energy dissipative and positivity preserving schemes for large-convection ion transport with steric and solvation effects
• Positivity preserving finite difference methods for Poisson-Nernst-Planck equations with steric interactions: application to slit-shaped nanopore conductance
• A fully discrete positivity-preserving and energy-dissipative finite difference scheme for Poisson-Nernst-Planck equations
• Local averaging type a posteriori error estimates for the nonlinear steady-state Poisson-Nernst-Planck equations
• Residual type a posteriori error estimates for the time-dependent Poisson-Nernst-Planck equations
• A positivity-preserving and free energy dissipative hybrid scheme for the Poisson-Nernst-Planck equations on polygonal and polyhedral meshes
• A structure-preserving finite element discretization for the time-dependent Nernst-Planck equation
• Two Entropic Finite Volume Schemes for a Nernst–Planck–Poisson System with Ion Volume Constraints
• A positivity-preserving, linear, energy stable and convergent numerical scheme for the Poisson-Nernst-Planck (PNP) system
• Positive and free energy satisfying schemes for diffusion with interaction potentials
• Fractional Poisson-Nernst-Planck model for ion channels. I: Basic formulations and algorithms
• A positive and energy stable numerical scheme for the Poisson-Nernst-Planck-Cahn-Hilliard equations with steric interactions
• A positivity-preserving, energy stable and convergent numerical scheme for the Poisson-Nernst-Planck system
• A linearized local conservative mixed finite element method for Poisson-Nernst-Planck equations
• Numerical analysis of a robust free energy diminishing finite volume scheme for parabolic equations with gradient structure
• A free energy satisfying discontinuous Galerkin method for one-dimensional Poisson-Nernst-Planck systems
• An Effective Finite Element Iterative Solver for a Poisson--Nernst--Planck Ion Channel Model with Periodic Boundary Conditions
• Structure-preserving numerical method for Maxwell-Ampère Nernst-Planck model
• Numerical analysis of locally conservative weak Galerkin dual-mixed finite element method for the time-dependent Poisson-Nernst-Planck system
• A positivity preserving and free energy dissipative difference scheme for the Poisson-Nernst-Planck system
• Efficient, positive, and energy stable schemes for multi-d Poisson-Nernst-Planck systems
• Field Model for Complex Ionic Fluids: Analytical Properties and Numerical Investigation
• Linear-scaling selected inversion based on hierarchical interpolative factorization for self Green's function for modified Poisson-Boltzmann equation in two dimensions
• An energy preserving finite difference scheme for the Poisson-Nernst-Planck system
• A flux-based moving mesh method applied to solving the Poisson-Nernst-Planck equations
• Unconditionally energy stable schemes for an electrohydrodynamic model of charge transport in dielectric liquids
• A unified structure preserving scheme for a multispecies model with a gradient flow structure and nonlocal interactions via singular kernels
• Linearized conservative finite element methods for the Nernst-Planck-Poisson equations
• An HDG method for the time-dependent drift-diffusion model of semiconductor devices
• The model reduction of the Vlasov–Poisson–Fokker–Planck system to the Poisson–Nernst–Planck system via the Deep Neural Network Approach
• An adaptive conservative finite volume method for Poisson-Nernst-Planck equations on a moving mesh
• A Structure-Preserving JKO Scheme for the SizeModified Poisson-Nernst-Planck-Cahn-Hilliard Equations
• A virtual element method for the steady-state Poisson-Nernst-Planck equations on polygonal meshes
• Interdiffusion in many dimensions: mathematical models, numerical simulations and experiment
• Positivity-preserving third order DG schemes for Poisson-Nernst-Planck equations
• A decoupling two-grid method for the time-dependent Poisson-Nernst-Planck equations
• A dynamic mass transport method for Poisson-Nernst-Planck equations
• Structure-preserving and efficient numerical methods for ion transport
• A conservative hybrid deep learning method for Maxwell-Ampère-Nernst-Planck equations
• An entropy satisfying discontinuous Galerkin method for nonlinear Fokker-Planck equations
• A weak Galerkin finite element method for time-dependent Poisson-Nernst-Planck equations
• Structure-preserving numerical methods for nonlinear Fokker-Planck equations with nonlocal interactions by an energetic variational approach
• An iteration solver for the Poisson-Nernst-Planck system and its convergence analysis
• Unconditional superconvergence analysis of a structure-preserving finite element method for the Poisson-Nernst-Planck equations
• Unconditionally positivity preserving and energy dissipative schemes for Poisson-Nernst-Planck equations
• Modified Poisson-Nernst-Planck model with accurate Coulomb correlation in variable media

This page was built for publication: A free energy satisfying finite difference method for Poisson-Nernst-Planck equations

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q349075)