A second-order Cartesian method for the simulation of electropermeabilization cell models

DOI10.1016/j.jcp.2015.03.028zbMath1349.78093OpenAlexW2033560757MaRDI QIDQ349865

Lisl Weynans, Clair Poignard, Michael Leguèbe

Publication date: 5 December 2016

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://hal.inria.fr/hal-00821758/file/RR-8302.pdf

zbMATH Keywords

truncation errorcell modelingfinite differences on Cartesian gridsinterface transmission conditions

Mathematics Subject Classification ID

Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Stability and convergence of numerical methods for initial value and initial-boundary value problems involving PDEs (65M12) Finite difference methods applied to problems in optics and electromagnetic theory (78M20)

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Cites Work

• Unnamed Item
• Finite-difference ghost-point multigrid methods on Cartesian grids for elliptic problems in arbitrary domains
• A decomposed immersed interface method for variable coefficient elliptic equations with non-smooth and discontinuous solutions
• On the accuracy of finite difference methods for elliptic problems with interfaces.
• Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations
• The rapid evaluation of volume integrals of potential theory on general regions
• A non-oscillatory Eulerian approach to interfaces in multimaterial flows (the ghost fluid method)
• A second-order-accurate symmetric discretization of the Poisson equation on irregular domains
• Level set methods and dynamic implicit surfaces
• A boundary condition capturing method for Poisson's equation on irregular domains
• A second order Cartesian finite volume method for elliptic interface and embedded Dirichlet problems
• ``Classical electropermeabilization modeling at the cell scale
• High order matched interface and boundary method for elliptic equations with discontinuous coefficients and singular sources
• Maximum Principle Preserving Schemes for Interface Problems with Discontinuous Coefficients
• A discontinuous Galerkin method for elliptic interface problems with application to electroporation
• Fast Parallel Iterative Solution of Poisson’s and the Biharmonic Equations on Irregular Regions
• The Immersed Interface Method for Elliptic Equations with Discontinuous Coefficients and Singular Sources
• A Fast Iterative Algorithm for Elliptic Interface Problems
• A Parallel Second Order Cartesian Method for Elliptic Interface Problems
• Convergence analysis of the immersed interface method
• The Explicit-Jump Immersed Interface Method: Finite Difference Methods for PDEs with Piecewise Smooth Solutions
• The Fast Solution of Poisson’s and the Biharmonic Equations on Irregular Regions
• Evolution, implementation, and application of level set and fast marching methods for advancing fronts