Boolean networks for modeling gene regulation
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Publication:3633722
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(29)- Formalizing and enriching phenotype signatures using Boolean networks
- Encoding threshold Boolean networks into reaction systems for the analysis of gene regulatory networks
- Canalization and symmetry in Boolean models for genetic regulatory networks
- Binarization of genetic expression data for the reconstruction of Boolean networks
- Reconstruction of Kauffman networks applying trees
- The transition from differential equations to Boolean networks: A case study in simplifying a regulatory network model
- Information transfer among coupled random Boolean networks
- Application of symbolic computations to the study of discrete models of some gene networks
- Comparison of stationary and oscillatory dynamics described by differential equations and Boolean maps in transcriptional regulatory circuits
- Dynamical regimes in non-ergodic random Boolean networks
- Reactive models for biological regulatory networks
- Gene expression modeling through positive Boolean functions
- Encoding Boolean networks into reaction systems for investigating causal dependencies in gene regulation
- Synthesis and simulation of ensembles of Boolean networks for cell fate decision
- Prioritization of candidate genes through Boolean networks
- Boolean models of bistable biological systems
- Continuous genetic networks
- Attractors in Boolean networks: a tutorial
- Percolation in bipartite Boolean networks and its role in sustaining life
- Construction of a Boolean model of gene and protein regulatory network with memory
- Modular construction of Boolean networks
- Inferring the topology of gene regulatory networks: an algebraic approach to reverse engineering
- Boolean biology: introducing Boolean networks and finite dynamical systems models to biology and mathematics courses
- Random Boolean networks response to external periodic signals
- On learning gene regulatory networks under the Boolean network model
- Higher order Boolean networks as models of cell state dynamics
- Dynamic information handling in continuous time Boolean network model of gene interactions
- Boolean modeling of genetic regulatory networks
- A proposal for using the ensemble approach to understand genetic regulatory networks
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