Optimizing restriction site placement for synthetic genomes

DOI10.1016/J.IC.2012.02.003MaRDI QIDQ418177zbMATH OpenOpenAlexFDO

Authors Pablo Montes, Heraldo Memelli, Charles B. Ward, Joondong Kim, Joseph S. B. Mitchell, Steven Skiena

Publication date 24 May 2012

Published in Information and Computation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.ic.2012.02.003

zbMATH Keywords

genome refactoringrestriction enzyme placementsynthetic biology

Mathematics Subject Classification ID

Complexity and performance of numerical algorithms (65Y20) Dynamic programming (90C39) Biochemistry, molecular biology (92C40)

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Cites work

• An $n^{5/2} $ Algorithm for Maximum Matchings in Bipartite Graphs
• Efficient string matching
• scientific article; zbMATH DE number 1559541 (Why is no real title available?)
• scientific article; zbMATH DE number 3231692 (Why is no real title available?)

Cited in

(4)

• Efficient codon optimization with motif engineering
• RESCOT: restriction enzyme set and combination optimization tools for rNMP capture techniques
• Optimizing Restriction Site Placement for Synthetic Genomes
• String editing under pattern constraints

Describes a project that uses

Uses Software

• Sitefind
• Nebcutter
• Genejax

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