Efficient Codon Optimization with Motif Engineering

DOI10.1007/978-3-642-25011-8_27MaRDI QIDQ3111662zbMATH OpenOpenAlexFDO

Authors Anne Condon, Chris Thachuk

Publication date 13 January 2012

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-642-25011-8_27

Mathematics Subject Classification ID

Combinatorics on words (68R15) Computing methodologies for text processing; mathematical typography (68U15) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Cited in

(7)

• Optimal codon randomization via mathematical programming
• Optimizing the codon usage of synthetic gene with QPSO algorithm
• Efficient codon optimization with motif engineering
• Codon optimization by 0-1 linear programming
• A theoretical analysis of codon adaptation index of the \textit{Boophilus microplus bm86} gene directed to the optimization of a DNA vaccine
• COStar: A D-star Lite-based dynamic search algorithm for codon optimization
• Optimizing restriction site placement for synthetic genomes

Describes a project that uses

Uses Software

• Codon

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