Fitting Markov Chain Models to Discrete State Series such as DNA Sequences

DOI10.1111/1467-9876.00139MaRDI QIDQ4244205zbMATH OpenOpenAlexFDO

Authors P. J. Avery, Daniel A. Henderson

Publication date 20 July 1999

Published in Journal of the Royal Statistical Society Series C: Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/1467-9876.00139

zbMATH Keywords

DNA sequencescontingency tablesdegrees of freedomlog-linear modelrainfall

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Contingency tables (62H17) Protein sequences, DNA sequences (92D20) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10)

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Cited in

(16)

• Fitting Markov property to genetic sequences
• A discrete autoregressive process as a model for short-range correlations in DNA sequences
• Semiparametric smoothing of sparse contingency tables
• Validation and Discovery in Markov Models of Genetics Data
• Investigating some attributes of periodicity in DNA sequences via semi-Markov modelling
• Global Markov models for eukaryote nucleotide data
• Pairwise likelihood inference for ordinal categorical time series
• Analysing grouping of nucleotides in DNA sequences using lumped processes constructed from Markov chains
• Fitting DNA sequences through log-linear modelling with linear constraints
• Testing the order of Markov dependence in DNA sequences
• Drifting Markov models with polynomial drift and applications to DNA sequences
• Joint distribution of \(k\)-tuple statistics in zero-one sequences of Markov-dependent trials
• ML, PL, QL in Markov Chain Models
• Exact goodness-of-fit tests for Markov chains
• Exact significance test for Markov order
• High-order extensions of the Double Chain Markov Model

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