scientific article; zbMATH DE number 1301595

zbMATH Open0931.92014MaRDI QIDQ4246783FDOQ4246783

Panos M. Pardalos, John L. Klepeis, Christodoulos A. Floudas

Publication date: 16 June 1999

Title of this publication is not available (Why is that?)

zbMATH Keywords

simulated annealinggenetic algorithmsprotein foldingpeptide docking

Mathematics Subject Classification ID

Numerical optimization and variational techniques (65K10) Biochemistry, molecular biology (92C40)

Cited In (18)

• A continuous variable neighborhood search heuristic for finding the three-dimensional structure of a molecule
• Title not available (Why is that?)
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• A review of recent advances in global optimization
• Analytic evaluation of the gradient and Hessian of molecular potential energy functions
• Speeding up continuous GRASP
• Global optimization in protein docking using clustering, underestimation and semidefinite programming
• A new class of hybrid global optimization algorithms for peptide structure prediction: integrated hybrids
• A composite branch and bound, cutting plane algorithm for concave minimization over a polyhedron
• Decomposition branch and bound method for globally solving linearly constrained indefinite quadratic minimization problems
• Global optimization of protein-peptide docking by a filling function method
• An SQP feasible descent algorithm for nonlinear inequality constrained optimization without strict complementarity
• A working set SQCQP algorithm with simple nonmonotone penalty parameters
• Protein structure optimization by side-chain positioning via beta-complex
• Continuous Variable Neighborhood Search (C-VNS) for Solving Systems of Nonlinear Equations
• Formulation assistance for global optimization problems
• A GA-simplex hybrid algorithm for global minimization of molecular potential energy functions
• Mathematical programming in computational biology: an annotated bibliography

Uses Software

• alphaBB

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