On computation of the steady-state probability distribution of probabilistic Boolean networks with gene perturbation

DOI10.1016/J.CAM.2012.02.022MaRDI QIDQ433954zbMATH OpenOpenAlexFDO

Authors Wen Li, Lu-Bin Cui, Michael Ng

Publication date 9 July 2012

Published in Journal of Computational and Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cam.2012.02.022

zbMATH Keywords

numerical resultsalgorithmsingular valuescondition numbergeneralized minimal residual methodlinear systemsstochastic matricesiterative methodperturbation boundpower methodprobabilistic Boolean networkssteady-state probability distribution

Mathematics Subject Classification ID

Computational methods in Markov chains (60J22) Numerical analysis or methods applied to Markov chains (65C40) Iterative numerical methods for linear systems (65F10)

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Cites work

• scientific article; zbMATH DE number 734901 (Why is no real title available?)
• A matrix perturbation method for computing the steady-state probability distributions of probabilistic Boolean networks with gene perturbations
• CONTROL OF STATIONARY BEHAVIOR IN PROBABILISTIC BOOLEAN NETWORKS BY MEANS OF STRUCTURAL INTERVENTION
• Control of Boolean networks: hardness results and algorithms for tree structured networks
• Markov chains: models, algorithms and applications
• Perturbation analysis of singular linear systems with index one^∗
• Steady-state probabilities for attractors in probabilistic Boolean networks
• Theorems on M-splittings of a singular M-Matrix which depend on graph structure

Cited in

(14)

• Deep Neural Networks for Solving Large Linear Systems Arising from High-Dimensional Problems
• On the long-run sensitivity of probabilistic Boolean networks
• Generating probabilistic Boolean networks from a prescribed stationary distribution
• Context-Sensitive Probabilistic Boolean Networks: Steady-State Properties, Reduction, and Steady-State Approximation
• A matrix perturbation method for computing the steady-state probability distributions of probabilistic Boolean networks with gene perturbations
• Dimension reduction of large sparse AND-NOT network models
• Steady-state probabilities for attractors in probabilistic Boolean networks
• On generating optimal sparse probabilistic Boolean networks with maximum entropy from a positive stationary distribution.
• Fitting Boolean networks from steady state perturbation data
• ASSA-PBN: An Approximate Steady-State Analyser of Probabilistic Boolean Networks
• On perturbation bounds for the joint stationary distribution of multivariate Markov chain models.
• Steady-state analysis of probabilistic Boolean networks
• Observability of switched Boolean control networks using algebraic forms
• GPU-accelerated steady-state computation of large probabilistic Boolean networks

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