On computation of the steady-state probability distribution of probabilistic Boolean networks with gene perturbation

DOI10.1016/J.CAM.2012.02.022zbMATH Open1255.65027OpenAlexW2044734875MaRDI QIDQ433954FDOQ433954

Authors: Wen Li, Lu-Bin Cui, Michael Ng 

Publication date: 9 July 2012

Published in: Journal of Computational and Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cam.2012.02.022

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zbMATH Keywords

numerical resultsalgorithmsingular valuescondition numbergeneralized minimal residual methodlinear systemsstochastic matricesiterative methodperturbation boundpower methodprobabilistic Boolean networkssteady-state probability distribution

Mathematics Subject Classification ID

Computational methods in Markov chains (60J22) Numerical analysis or methods applied to Markov chains (65C40) Iterative numerical methods for linear systems (65F10)

Cites Work

• Title not available (Why is that?)
• Control of Boolean networks: hardness results and algorithms for tree structured networks
• Markov chains: models, algorithms and applications
• Theorems on M-splittings of a singular M-Matrix which depend on graph structure
• Steady-state probabilities for attractors in probabilistic Boolean networks
• Perturbation analysis of singular linear systems with index one^∗
• CONTROL OF STATIONARY BEHAVIOR IN PROBABILISTIC BOOLEAN NETWORKS BY MEANS OF STRUCTURAL INTERVENTION
• A matrix perturbation method for computing the steady-state probability distributions of probabilistic Boolean networks with gene perturbations

Cited In (14)

• Deep Neural Networks for Solving Large Linear Systems Arising from High-Dimensional Problems
• On the long-run sensitivity of probabilistic Boolean networks
• Generating probabilistic Boolean networks from a prescribed stationary distribution
• Context-Sensitive Probabilistic Boolean Networks: Steady-State Properties, Reduction, and Steady-State Approximation
• A matrix perturbation method for computing the steady-state probability distributions of probabilistic Boolean networks with gene perturbations
• Dimension reduction of large sparse AND-NOT network models
• On generating optimal sparse probabilistic Boolean networks with maximum entropy from a positive stationary distribution.
• Steady-state probabilities for attractors in probabilistic Boolean networks
• Fitting Boolean networks from steady state perturbation data
• ASSA-PBN: An Approximate Steady-State Analyser of Probabilistic Boolean Networks
• On perturbation bounds for the joint stationary distribution of multivariate Markov chain models.
• Steady-state analysis of probabilistic Boolean networks
• Observability of switched Boolean control networks using algebraic forms
• GPU-accelerated steady-state computation of large probabilistic Boolean networks

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