Hessian calculation for phylogenetic likelihood based on the pruning algorithm and its applications

DOI10.1515/1544-6115.1779MaRDI QIDQ461628zbMATH OpenOpenAlexWikidataFDO

Authors Toby Kenney, Hong Gu

Publication date 13 October 2014

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/1544-6115.1779

zbMATH Keywords

HessianlikelihoodMarkov processNewton-Raphsonphylogeny

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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(2)

• Phylogenetic estimation with partial likelihood tensors
• Maximum likelihood estimation of symmetric group-based models via numerical algebraic geometry

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