Disentangled Long-Read De Bruijn Graphs via Optical Maps

DOI10.4230/LIPICS.WABI.2017.1zbMATH Open1443.92132OpenAlexW3021341025MaRDI QIDQ5111789FDOQ5111789

Simon J. Puglisi, Leena Salmela, Bahar Alipanahi, Martin D. Muggli, Christina Boucher

Publication date: 27 May 2020

Full work available at URL: https://drops.dagstuhl.de/opus/volltexte/2017/7661/pdf/LIPIcs-WABI-2017-1.pdf

zbMATH Keywords

optical mapsPacBiopositional de Bruijn graph

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Cites Work

• An Eulerian path approach to DNA fragment assembly
• Succinct de Bruijn Graphs

Cited In (1)

• Kermit: Guided Long Read Assembly using Coloured Overlap Graphs

Uses Software

• SEQuel
• SPAdes
• Velvet
• QUAST
• ABySS
• OMBlast
• PBSIM
• Maligner
• Canu

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