Fast and efficient Rmap assembly using the bi-labelled de Bruijn graph

DOI10.4230/LIPICS.WABI.2020.9zbMATH Open1518.92112MaRDI QIDQ6487635FDOQ6487635

Authors: Kingshuk Mukherjee, Massimiliano Rossi, Leena Salmela, Christina Boucher 

Publication date: 7 February 2023

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• Disentangled long-read de Bruijn graphs via optical maps
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zbMATH Keywords

assemblyde Bruijn graphoptical maps

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Cites Work

• OMGS: optical map-based genome scaffolding
• Multidimensional binary search trees used for associative searching
• An Eulerian path approach to DNA fragment assembly

Cited In (4)

• OMGS: optical map-based genome scaffolding
• Disentangled long-read de Bruijn graphs via optical maps
• Kermit: guided long read assembly using coloured overlap graphs
• A succinct solution to Rmap alignment

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