Analysis of min-hashing for variant tolerant DNA read mapping

DOI10.4230/LIPICS.WABI.2017.21MaRDI QIDQ5111827zbMATH OpenOpenAlexFDO

Authors Jens Quedenfeld, Sven Rahmann

Publication date 27 May 2020

Full work available at URL https://dblp.uni-trier.de/db/conf/wabi/wabi2017.html#QuedenfeldR17

zbMATH Keywords

analysis of algorithmsmin-hashingread mappingSNPvariant

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to biology (92-04) Protein sequences, DNA sequences (92D20)

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Cites work

• Analysis of min-hashing for variant tolerant DNA read mapping
• scientific article; zbMATH DE number 1775418 (Why is no real title available?)
• Indexing compressed text

Cited in

(5)

• Can we replace reads by numeric signatures? Lyndon fingerprints as representations of sequencing reads for machine learning
• Read mapping on genome variation graphs
• abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation
• Analysis of min-hashing for variant tolerant DNA read mapping
• Exact sketch-based read mapping

Describes a project that uses

Uses Software

• VATRAM

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