Analysis of min-hashing for variant tolerant DNA read mapping

DOI10.4230/LIPICS.WABI.2017.21zbMATH Open1443.92146OpenAlexW2748432979MaRDI QIDQ5111827FDOQ5111827

Authors: Jens Quedenfeld, Sven Rahmann 

Publication date: 27 May 2020

Full work available at URL: https://dblp.uni-trier.de/db/conf/wabi/wabi2017.html#QuedenfeldR17

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zbMATH Keywords

SNPanalysis of algorithmsvariantread mappingmin-hashing

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

Cites Work

• Indexing compressed text
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• Analysis of min-hashing for variant tolerant DNA read mapping

Cited In (5)

• Read mapping on genome variation graphs
• Analysis of min-hashing for variant tolerant DNA read mapping
• Can we replace reads by numeric signatures? Lyndon fingerprints as representations of sequencing reads for machine learning
• Exact sketch-based read mapping
• abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation

Uses Software

• VATRAM

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