Simultaneous rank tests for detecting differentially expressed genes

DOI10.1080/00949655.2015.1046073OpenAlexW2232041549MaRDI QIDQ5222387FDOQ5222387

Authors Bo Li, Hossein Mansouri

Publication date 1 April 2020

Published in Journal of Statistical Computation and Simulation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/00949655.2015.1046073

zbMATH Keywords

bootstrapmultiple testingmicroarraysimultaneous testsrobustness of validityaligned rank transformation

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Nonparametric robustness (62G35) Applications of statistics to biology and medical sciences; meta analysis (62P10) Nonparametric statistical resampling methods (62G09) Linear inference, regression (62Jxx)

Recommendations

• Generalized Rank Tests for Replicated Microarray Data
• On simultaneous confidence intervals based on rank-estimates with application to analysis of gene expression data
• Simultaneous inference based on rank statistics in linear models
• Aligned rank transform tests in linear models
• Bayesian Robust Inference for Differential Gene Expression in Microarrays with Multiple Samples

Cites work

• scientific article; zbMATH DE number 50804 (Why is no real title available?)
• scientific article; zbMATH DE number 708500 (Why is no real title available?)
• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• scientific article; zbMATH DE number 1750184 (Why is no real title available?)
• scientific article; zbMATH DE number 1750188 (Why is no real title available?)
• Aligned rank transform tests in linear models
• Computational and Statistical Approaches to Genomics
• Exact simultaneous confidence intervals for multiple comparisons with the mean
• Experimental design for gene expression microarrays
• Multiple hypothesis testing in microarray experiments.
• On the numerical availability of multiple comparison procedures
• Simultaneous confidence intervals for differential gene expressions
• Simultaneous inference based on rank statistics in linear models
• The Efficiency of Simulation-Based Multiple Comparisons

Cited in

(8)

• A likelihood ratio test for the proportion of non-differentially expressed genes
• Accurate Ranking of Differentially Expressed Genes by a Distribution-Free Shrinkage Approach
• \texttt{TopKLists}: a comprehensive \texttt{R} package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists
• Latent rank change detection for analysis of splice-junction microarrays with nonlinear effects
• Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings
• Simultaneous confidence intervals of estimable functions based on quasi-likelihood in generalized linear models for over-dispersed data
• Generalized Rank Tests for Replicated Microarray Data
• On simultaneous confidence intervals based on rank-estimates with application to analysis of gene expression data

Describes a project that uses

Uses Software

• bootstrap
• sma

This page was built for publication: Simultaneous rank tests for detecting differentially expressed genes

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5222387)