Bayesian phylogenetic inference using a combinatorial sequential Monte Carlo method

DOI10.1080/01621459.2015.1054487MaRDI QIDQ5367447zbMATHOpenAlexFDO

Authors Alexandre Bouchard-Côté, Arnaud Doucet, L. Wang

Publication date 13 October 2017

Published in Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/01621459.2015.1054487

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Genetics and epigenetics (92D10)

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Cited in

(15)

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• Fast Convergence of Markov Chain Monte Carlo Algorithms for Phylogenetic Reconstruction with Homogeneous Data on Closely Related Species
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• An Efficient Coalescent Model for Heterochronously Sampled Molecular Data
• Bayesian analysis of continuous time Markov chains with application to phylogenetic modelling
• The jigsaw puzzle of sequence phenotype inference: piecing together Shannon entropy, importance sampling, and empirical Bayes
• BayesCAT: Bayesian co-estimation of alignment and tree
• Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths
• Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
• Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting
• Variational supertrees for Bayesian phylogenetics
• Bayesian Phylogenetic Inference from Animal Mitochondrial Genome Arrangements
• Limitations of Markov chain Monte Carlo algorithms for Bayesian inference of phylogeny

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