A stabilized finite element method for modified Poisson-Nernst-Planck equations to determine ion flow through a nanopore

DOI10.4208/CICP.101112.100413AMaRDI QIDQ5372191zbMATH OpenOpenAlexWikidataFDO

Authors Jehanzeb Hameed Chaudhry, Jeffrey Comer, Aleksei Aksimentiev, Luke Olson

Publication date 27 October 2017

Published in Communications in Computational Physics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc3867981

Mathematics Subject Classification ID

Finite element, Rayleigh-Ritz and Galerkin methods for initial value and initial-boundary value problems involving PDEs (65M60) Statistical mechanics of nanostructures and nanoparticles (82D80)

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(19)

• Adaptive and iterative methods for simulations of nanopores with the PNP-Stokes equations
• Ion transport in dipolar medium. I: A local dielectric Poisson-Nernst-Planck/Poisson-Boltzmann model
• Positivity preserving finite difference methods for Poisson-Nernst-Planck equations with steric interactions: application to slit-shaped nanopore conductance
• Steric modulation of ionic currents in DNA translocation through nanopores
• Genetic exponentially fitted method for solving multi-dimensional drift-diffusion equations
• A positivity-preserving and free energy dissipative hybrid scheme for the Poisson-Nernst-Planck equations on polygonal and polyhedral meshes
• A stabilized finite element method for the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations
• Fractional Poisson-Nernst-Planck model for ion channels. I: Basic formulations and algorithms
• Finite element solution of the equations governing the flow of electrolyte in charged microporous membranes
• A free energy satisfying discontinuous Galerkin method for one-dimensional Poisson-Nernst-Planck systems
• An Effective Finite Element Iterative Solver for a Poisson--Nernst--Planck Ion Channel Model with Periodic Boundary Conditions
• Mixed finite element method for modified Poisson-Nernst-Planck/Navier-Stokes equations
• Convergence and superconvergence analysis for a mass conservative, energy stable and linearized BDF2 scheme of the Poisson-Nernst-Planck equations
• Second-order Poisson-Nernst-Planck solver for ion transport
• Analysis of the drift-diffusion-Poisson-Boltzmann system for nanowire and nanopore sensors in the alternating-current regime
• Stabilized finite element methods to simulate the conductances of ion channels
• Structure-preserving and efficient numerical methods for ion transport
• An inverse averaging finite element method for solving the size-modified Poisson-Nernst-Planck equations in ion channel simulations
• Use and comparative assessment of the CVFEM method for Poisson-Boltzmann and Poisson-Nernst-Planck three dimensional simulations of impedimetric nano-biosensors operated in the DC and AC small signal regimes

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