Analysis of discrete bioregulatory networks using symbolic steady states

DOI10.1007/s11538-010-9609-1zbMath1214.92033OpenAlexW2085885352WikidataQ51623368 ScholiaQ51623368MaRDI QIDQ542031

Heike Siebert

Publication date: 8 June 2011

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-010-9609-1

zbMATH Keywords

modules

Mathematics Subject Classification ID

Applications of graph theory (05C90) Symbolic dynamics (37B10) Systems biology, networks (92C42)

Related Items (6)

On circuit functionality in Boolean networks ⋮ Analysis and characterization of asynchronous state transition graphs using extremal states ⋮ Dynamics of gene regulatory networks with stochastic propensities ⋮ Bio-Logics: Logical Analysis of Bioregulatory Networks ⋮ Computing maximal and minimal trap spaces of Boolean networks ⋮ Algebraic methods in mathematical biology

Uses Software

• Ginsim

Cites Work

• Deriving behavior of Boolean bioregulatory networks from subnetwork dynamics
• Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
• Positive circuits and maximal number of fixed points in discrete dynamical systems
• A survey of the theory of hypercube graphs
• The modular structure of Kauffman networks
• Nested canalyzing, unate cascade, and polynomial functions
• Necessary conditions for multistationarity in discrete dynamical systems
• Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits
• USING GRAPH CONCEPTS TO UNDERSTAND THE ORGANIZATION OF COMPLEX SYSTEMS
• Relating Attractors and Singular Steady States in the Logical Analysis of Bioregulatory Networks
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