Analysis and characterization of asynchronous state transition graphs using extremal states

DOI10.1007/S11538-012-9782-5zbMATH Open1272.92018OpenAlexW1997564070WikidataQ47949107 ScholiaQ47949107MaRDI QIDQ371981FDOQ371981

Authors: Therese Lorenz, Heike Siebert, Alexander Bockmayr 

Publication date: 11 October 2013

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-012-9782-5

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zbMATH Keywords

systems biologymodel reductionregulatory networksfinite dynamical systemslogical modelingThomas formalism

Mathematics Subject Classification ID

Applications of graph theory (05C90) Dynamical systems in biology (37N25) Systems biology, networks (92C42)

Cites Work

• Multistationarity, the basis of cell differentiation and memory. II: Logical analysis of regulatory networks in terms of feedback circuits
• Title not available (Why is that?)
• Maximum number of fixed points in regulatory Boolean networks
• Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
• Reduction of Boolean network models
• Embedding of biological regulatory networks and property preservation
• Behaviour Preservation of a Biological Regulatory Network when Embedded into a Larger Network
• From structure to dynamics: frequency tuning in the p53-Mdm2 network. I: Logical approach
• Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics
• Dynamically consistent reduction of logical regulatory graphs
• Analysis of discrete bioregulatory networks using symbolic steady states
• Mapping multivalued onto Boolean dynamics

Cited In (3)

• Computational Methods in Systems Biology
• Attractor computation using interconnected Boolean networks: testing growth rate models in \textit{E. coli}
• Dynamical modeling and analysis of large cellular regulatory networks

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